Variant report

Variant	rs60167783
Chromosome Location	chr8:67922202-67922203
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:67835724..67839016-chr8:67920843..67924077,3	K562	blood:

Variant related genes	Relation type
ENSG00000245910	Chromatin interaction

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs1138476	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11985037	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11988175	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11989855	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11990088	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11992626	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11997189	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1466283	0.92[EUR][1000 genomes]
rs16933065	1.00[ASN][1000 genomes]
rs16933071	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16933097	1.00[ASN][1000 genomes]
rs16933148	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16933178	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28377622	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55783506	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs55908039	0.84[EUR][1000 genomes]
rs55993413	0.84[EUR][1000 genomes]
rs56041142	1.00[ASN][1000 genomes]
rs56115408	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56717011	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56902031	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57530222	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57931195	0.84[EUR][1000 genomes]
rs58160220	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58307420	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59061775	0.83[EUR][1000 genomes]
rs60624770	0.96[EUR][1000 genomes]
rs60964596	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61476700	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61552467	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7004549	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7009678	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73691159	0.91[EUR][1000 genomes]
rs73691161	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73691183	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73691187	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73691188	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73691189	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73691190	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73691191	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73691194	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73693106	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73693110	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73693114	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73693117	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73693129	0.92[EUR][1000 genomes]
rs73693136	0.84[EUR][1000 genomes]
rs73693148	0.81[EUR][1000 genomes]
rs73693149	0.84[EUR][1000 genomes]
rs73693150	0.84[EUR][1000 genomes]
rs73693151	0.84[EUR][1000 genomes]
rs7816746	0.87[EUR][1000 genomes]
rs7831052	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1802652	chr8:67894007-67964309	Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1016742	chr8:67917418-68125319	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv539639	chr8:67917418-68125319	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:67917200-67925800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr8:67921600-67922400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr8:67921800-67922600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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