Variant report

Variant	rs7831052
Chromosome Location	chr8:68152209-68152210
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TBL1XR1	chr8:68152205-68152236	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:68151600..68153614-chr8:68161063..68163903,2	K562	blood:

Variant related genes	Relation type
ARFGEF1	TF binding region

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs1138476	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[EUR][1000 genomes]
rs11985037	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[EUR][1000 genomes]
rs11986053	1.00[CHB][hapmap]
rs11986982	1.00[CEU][hapmap]
rs11988175	0.84[EUR][1000 genomes]
rs11989855	1.00[CEU][hapmap];1.00[CHB][hapmap];0.80[EUR][1000 genomes]
rs11990088	0.84[EUR][1000 genomes]
rs11992626	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[EUR][1000 genomes]
rs11995853	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11997189	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[EUR][1000 genomes]
rs11997404	1.00[CEU][hapmap]
rs1466283	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16919053	1.00[CEU][hapmap]
rs16933148	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[EUR][1000 genomes]
rs16933162	1.00[CEU][hapmap]
rs16933170	1.00[CEU][hapmap]
rs16933173	1.00[CEU][hapmap]
rs16933178	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16933182	1.00[CEU][hapmap]
rs16933190	1.00[CEU][hapmap]
rs16933301	1.00[CEU][hapmap]
rs17335495	1.00[ASN][1000 genomes]
rs2290585	1.00[CEU][hapmap]
rs2305672	1.00[CEU][hapmap]
rs2305673	1.00[CEU][hapmap]
rs28377622	0.84[EUR][1000 genomes]
rs55783506	0.80[EUR][1000 genomes]
rs55908039	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55993413	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56070137	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56115408	0.84[EUR][1000 genomes]
rs56902031	0.84[EUR][1000 genomes]
rs57530222	0.84[EUR][1000 genomes]
rs57931195	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58160220	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58307420	0.84[EUR][1000 genomes]
rs59061775	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60167783	0.84[EUR][1000 genomes]
rs61476700	0.84[EUR][1000 genomes]
rs61552467	0.84[EUR][1000 genomes]
rs6984568	1.00[CEU][hapmap]
rs6990298	1.00[CEU][hapmap]
rs6991974	1.00[CEU][hapmap]
rs7004549	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs7009678	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs73691183	0.84[EUR][1000 genomes]
rs73691187	0.84[EUR][1000 genomes]
rs73691188	0.84[EUR][1000 genomes]
rs73691189	0.84[EUR][1000 genomes]
rs73691190	0.84[EUR][1000 genomes]
rs73691191	0.84[EUR][1000 genomes]
rs73691194	0.84[EUR][1000 genomes]
rs73693106	0.84[EUR][1000 genomes]
rs73693110	0.84[EUR][1000 genomes]
rs73693114	0.84[EUR][1000 genomes]
rs73693117	0.84[EUR][1000 genomes]
rs73693129	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73693136	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73693148	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73693149	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73693150	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73693151	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7461383	1.00[CEU][hapmap]
rs7816746	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7834516	1.00[CEU][hapmap]
rs7841884	1.00[CEU][hapmap]

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:68100800-68152600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr8:68103600-68158200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr8:68104600-68193000	Strong transcription	Primary neutrophils fromperipheralblood	blood
4	chr8:68104600-68215600	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr8:68104800-68159600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr8:68104800-68182400	Strong transcription	Primary T helper cells fromperipheralblood	blood
7	chr8:68105000-68184400	Strong transcription	Primary monocytes fromperipheralblood	blood
8	chr8:68105600-68158800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr8:68113000-68172600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr8:68117000-68154200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr8:68119000-68157200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr8:68128000-68154200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr8:68129000-68154000	Weak transcription	Gastric	stomach
14	chr8:68135200-68156000	Strong transcription	Primary T helper cells PMA-I stimulated	--
15	chr8:68135200-68184400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr8:68135800-68154000	Weak transcription	Esophagus	oesophagus
17	chr8:68136000-68154000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr8:68136000-68154800	Weak transcription	Stomach Mucosa	stomach
19	chr8:68136200-68154000	Weak transcription	Spleen	Spleen
20	chr8:68139000-68154000	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr8:68139000-68178000	Weak transcription	Small Intestine	intestine
22	chr8:68139200-68154200	Weak transcription	Aorta	Aorta
23	chr8:68139200-68155000	Weak transcription	Placenta Amnion	Placenta Amnion
24	chr8:68139600-68153800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr8:68139600-68154000	Weak transcription	Fetal Brain Female	brain
26	chr8:68139600-68161400	Weak transcription	Fetal Brain Male	brain
27	chr8:68139800-68154000	Weak transcription	Brain Angular Gyrus	brain
28	chr8:68139800-68154000	Weak transcription	Brain Substantia Nigra	brain
29	chr8:68139800-68154000	Weak transcription	Colonic Mucosa	Colon
30	chr8:68139800-68154000	Weak transcription	Ovary	ovary
31	chr8:68139800-68154200	Weak transcription	Right Ventricle	heart
32	chr8:68139800-68154800	Weak transcription	Fetal Kidney	kidney
33	chr8:68139800-68154800	Weak transcription	K562	blood
34	chr8:68139800-68162200	Weak transcription	A549	lung
35	chr8:68140400-68155200	Weak transcription	Hela-S3	cervix
36	chr8:68140800-68152800	Strong transcription	Rectal Mucosa Donor 31	rectum
37	chr8:68142000-68158800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
38	chr8:68142800-68155000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
39	chr8:68143200-68152600	Strong transcription	Dnd41	blood
40	chr8:68143400-68152800	Strong transcription	HUES64 Cell Line	embryonic stem cell
41	chr8:68143600-68154400	Strong transcription	HUES48 Cell Line	embryonic stem cell
42	chr8:68143600-68156000	Strong transcription	Rectal Mucosa Donor 29	rectum
43	chr8:68143800-68158600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
44	chr8:68144200-68154200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr8:68145000-68152400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr8:68145800-68152600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr8:68145800-68153200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr8:68146000-68157400	Strong transcription	Adipose Nuclei	Adipose
49	chr8:68146000-68168200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
50	chr8:68147600-68153000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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