Variant report

Variant	rs17335495
Chromosome Location	chr8:68216310-68216311
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:68213873..68216751-chr8:68219883..68222658,2	MCF-7	breast:
2	chr8:68215076..68216603-chr8:68218593..68220372,2	MCF-7	breast:
3	chr8:68214120..68216423-chr8:68240634..68243591,2	K562	blood:
4	chr8:68211004..68214267-chr8:68215813..68220684,4	MCF-7	breast:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11992626	1.00[CHB][hapmap]
rs11995853	1.00[ASN][1000 genomes]
rs11997189	1.00[CHB][hapmap]
rs1466283	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs16919053	1.00[CEU][hapmap]
rs16933178	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2305672	1.00[CEU][hapmap]
rs55908039	1.00[ASN][1000 genomes]
rs55993413	1.00[ASN][1000 genomes]
rs56070137	1.00[ASN][1000 genomes]
rs57931195	1.00[ASN][1000 genomes]
rs58160220	1.00[ASN][1000 genomes]
rs59061775	1.00[ASN][1000 genomes]
rs6991974	1.00[CEU][hapmap]
rs73693136	1.00[ASN][1000 genomes]
rs73693148	1.00[ASN][1000 genomes]
rs73693149	1.00[ASN][1000 genomes]
rs73693150	1.00[ASN][1000 genomes]
rs73693151	1.00[ASN][1000 genomes]
rs7816746	1.00[ASN][1000 genomes]
rs7831052	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752263	chr8:68170946-68788493	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	esv1839724	chr8:68195817-68346693	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:68155800-68226000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr8:68159000-68221400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr8:68162400-68231000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr8:68173600-68236400	Weak transcription	Stomach Mucosa	stomach
5	chr8:68174000-68225600	Weak transcription	Esophagus	oesophagus
6	chr8:68175000-68219400	Weak transcription	Right Ventricle	heart
7	chr8:68176000-68219800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr8:68179200-68221600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr8:68193000-68218400	Weak transcription	Gastric	stomach
10	chr8:68197800-68234200	Weak transcription	Aorta	Aorta
11	chr8:68199600-68219600	Weak transcription	Brain Cingulate Gyrus	brain
12	chr8:68199800-68218400	Weak transcription	Psoas Muscle	Psoas
13	chr8:68199800-68219600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr8:68199800-68219800	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr8:68200200-68219600	Weak transcription	Brain Angular Gyrus	brain
16	chr8:68204400-68219600	Weak transcription	NHLF	lung
17	chr8:68208800-68226000	Weak transcription	A549	lung
18	chr8:68209200-68219000	Weak transcription	Left Ventricle	heart
19	chr8:68209600-68218400	Weak transcription	HSMMtube	muscle
20	chr8:68209600-68252400	Weak transcription	Fetal Kidney	kidney
21	chr8:68209800-68221400	Weak transcription	Fetal Brain Female	brain
22	chr8:68210800-68218800	Weak transcription	Colon Smooth Muscle	Colon
23	chr8:68210800-68219600	Weak transcription	Fetal Heart	heart
24	chr8:68210800-68225600	Weak transcription	Rectal Smooth Muscle	rectum
25	chr8:68210800-68225800	Weak transcription	K562	blood
26	chr8:68211000-68219400	Weak transcription	Brain Substantia Nigra	brain
27	chr8:68211000-68219600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr8:68211600-68240800	Weak transcription	Fetal Brain Male	brain
29	chr8:68212000-68225200	Weak transcription	Cortex derived primary cultured neurospheres	brain
30	chr8:68212200-68219000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr8:68212200-68219000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr8:68212200-68219600	Weak transcription	Primary hematopoietic stem cells	blood
33	chr8:68212200-68220000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr8:68212200-68220200	Weak transcription	Thymus	Thymus
35	chr8:68212200-68221200	Weak transcription	Fetal Muscle Leg	muscle
36	chr8:68212200-68221800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
37	chr8:68212200-68225800	Weak transcription	Spleen	Spleen
38	chr8:68212200-68229000	Weak transcription	HepG2	liver
39	chr8:68212400-68219400	Weak transcription	Brain Hippocampus Middle	brain
40	chr8:68212400-68219600	Weak transcription	Fetal Lung	lung
41	chr8:68212400-68219800	Weak transcription	Skeletal Muscle Male	skeletal muscle
42	chr8:68212400-68228200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
43	chr8:68212600-68219600	Weak transcription	NHDF-Ad	bronchial
44	chr8:68212600-68219800	Weak transcription	Brain Anterior Caudate	brain
45	chr8:68212800-68221200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
46	chr8:68212800-68225800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr8:68212800-68252400	Weak transcription	Hela-S3	cervix
48	chr8:68213000-68220000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr8:68213000-68225400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr8:68213000-68225800	Weak transcription	H9 Cell Line	embryonic stem cell

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