Variant report

Variant	rs59061775
Chromosome Location	chr8:68105605-68105606
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:68098861..68101473-chr8:68104225..68105893,2	MCF-7	breast:
2	chr8:67835666..67838767-chr8:68102969..68106135,3	K562	blood:
3	chr8:68103791..68106483-chr8:68107302..68110332,3	K562	blood:
4	chr8:67971594..67973615-chr8:68104400..68106393,2	MCF-7	breast:
5	chr8:68103791..68106410-chr8:68107302..68110578,4	K562	blood:
6	chr8:68103451..68106399-chr8:68110061..68112606,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000245910	Chromatin interaction

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs1138476	0.83[EUR][1000 genomes]
rs11985037	0.83[EUR][1000 genomes]
rs11988175	0.83[EUR][1000 genomes]
rs11990088	0.83[EUR][1000 genomes]
rs11992626	0.83[EUR][1000 genomes]
rs11995853	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11997189	0.83[EUR][1000 genomes]
rs1466283	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16919053	0.81[AMR][1000 genomes]
rs16933148	0.83[EUR][1000 genomes]
rs16933178	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16933190	0.84[AMR][1000 genomes]
rs17335495	1.00[ASN][1000 genomes]
rs2305672	0.81[AMR][1000 genomes]
rs28377622	0.83[EUR][1000 genomes]
rs55908039	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55993413	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56070137	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56115408	0.83[EUR][1000 genomes]
rs56902031	0.83[EUR][1000 genomes]
rs57530222	0.83[EUR][1000 genomes]
rs57931195	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58160220	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58307420	0.83[EUR][1000 genomes]
rs60167783	0.83[EUR][1000 genomes]
rs61476700	0.83[EUR][1000 genomes]
rs61552467	0.83[EUR][1000 genomes]
rs7004549	0.83[EUR][1000 genomes]
rs7009678	0.83[EUR][1000 genomes]
rs73691161	0.83[EUR][1000 genomes]
rs73691183	0.83[EUR][1000 genomes]
rs73691187	0.83[EUR][1000 genomes]
rs73691188	0.83[EUR][1000 genomes]
rs73691189	0.83[EUR][1000 genomes]
rs73691190	0.83[EUR][1000 genomes]
rs73691191	0.83[EUR][1000 genomes]
rs73691194	0.83[EUR][1000 genomes]
rs73693106	0.83[EUR][1000 genomes]
rs73693110	0.83[EUR][1000 genomes]
rs73693114	0.83[EUR][1000 genomes]
rs73693117	0.83[EUR][1000 genomes]
rs73693129	0.91[EUR][1000 genomes]
rs73693136	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73693148	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73693149	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73693150	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73693151	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7816746	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7831052	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016742	chr8:67917418-68125319	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv539639	chr8:67917418-68125319	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv1022561	chr8:68011159-68129755	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv1024156	chr8:68018110-68130602	Strong transcription ZNF genes & repeats Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases
5	nsv539640	chr8:68018110-68130602	ZNF genes & repeats Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases
6	nsv1016128	chr8:68019177-68129755	Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases
7	nsv1028249	chr8:68022357-68127243	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases
8	nsv1029236	chr8:68022357-68129755	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases
9	nsv1020062	chr8:68022357-68135111	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases
10	nsv1025996	chr8:68025803-68129755	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases
11	nsv1019276	chr8:68026084-68130602	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases
12	nsv539641	chr8:68026084-68130602	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Enhancers	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases
13	nsv1026508	chr8:68038761-68135111	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:68074800-68106200	Weak transcription	Colonic Mucosa	Colon
2	chr8:68075000-68107200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr8:68075200-68136800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr8:68075800-68110800	Weak transcription	HepG2	liver
5	chr8:68075800-68112200	Weak transcription	Stomach Mucosa	stomach
6	chr8:68076000-68107000	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr8:68076800-68109000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr8:68077200-68108000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr8:68078800-68110400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr8:68088000-68107000	Weak transcription	HUVEC	blood vessel
11	chr8:68088200-68106000	Weak transcription	Fetal Brain Male	brain
12	chr8:68088200-68107400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr8:68088200-68107400	Weak transcription	Spleen	Spleen
14	chr8:68088200-68110800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr8:68088200-68111000	Weak transcription	Fetal Kidney	kidney
16	chr8:68088200-68111600	Weak transcription	Gastric	stomach
17	chr8:68088400-68107200	Weak transcription	Right Ventricle	heart
18	chr8:68088400-68110800	Weak transcription	Pancreas	Pancrea
19	chr8:68088400-68110800	Weak transcription	Thymus	Thymus
20	chr8:68088600-68107400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr8:68088600-68107600	Weak transcription	Esophagus	oesophagus
22	chr8:68089000-68107400	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr8:68089600-68107200	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr8:68089600-68111800	Weak transcription	Brain Angular Gyrus	brain
25	chr8:68091200-68111600	Weak transcription	Rectal Smooth Muscle	rectum
26	chr8:68091200-68114600	Weak transcription	Small Intestine	intestine
27	chr8:68091400-68107400	Weak transcription	Aorta	Aorta
28	chr8:68091400-68108200	Weak transcription	Fetal Heart	heart
29	chr8:68091400-68112000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
30	chr8:68091800-68110800	Weak transcription	Brain Substantia Nigra	brain
31	chr8:68092000-68107200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
32	chr8:68092000-68110600	Weak transcription	Brain Hippocampus Middle	brain
33	chr8:68092600-68111400	Weak transcription	Pancreatic Islets	Pancreatic Islet
34	chr8:68092800-68107200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
35	chr8:68092800-68107400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr8:68092800-68110800	Weak transcription	Colon Smooth Muscle	Colon
37	chr8:68093400-68109000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
38	chr8:68094600-68107200	Weak transcription	Osteobl	bone
39	chr8:68094800-68111800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
40	chr8:68095000-68108600	Weak transcription	Brain Inferior Temporal Lobe	brain
41	chr8:68095600-68106400	Weak transcription	Hela-S3	cervix
42	chr8:68095800-68106600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr8:68096000-68105800	Weak transcription	HUES64 Cell Line	embryonic stem cell
44	chr8:68097400-68133600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr8:68100800-68152600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr8:68101200-68107400	Weak transcription	Fetal Intestine Small	intestine
47	chr8:68101200-68117800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr8:68101200-68130800	Strong transcription	Dnd41	blood
49	chr8:68101200-68144200	Strong transcription	Liver	Liver
50	chr8:68101200-68144800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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