Variant report

Variant	rs16933065
Chromosome Location	chr8:67727668-67727669
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:67726462..67729260-chr8:67741119..67743170,3	MCF-7	breast:
2	chr8:67622340..67625183-chr8:67726640..67728169,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000104205	Chromatin interaction

Extended variants
information (count: 81 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:80)

rs_ID	r²[population]
rs10504393	1.00[CEU][hapmap]
rs1138476	1.00[ASN][1000 genomes]
rs11985572	1.00[CEU][hapmap]
rs11986831	1.00[CEU][hapmap]
rs11987311	1.00[CEU][hapmap]
rs11988213	1.00[CEU][hapmap]
rs11990322	1.00[CEU][hapmap]
rs11990461	1.00[CEU][hapmap]
rs11990636	1.00[CEU][hapmap]
rs11992252	1.00[CEU][hapmap]
rs11992605	1.00[CEU][hapmap]
rs11995256	1.00[CEU][hapmap]
rs11996861	1.00[CEU][hapmap]
rs11997260	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11997967	1.00[CEU][hapmap]
rs11998194	1.00[CEU][hapmap]
rs11998301	1.00[CEU][hapmap]
rs12114734	1.00[CEU][hapmap]
rs16932996	1.00[CEU][hapmap]
rs16933013	1.00[CEU][hapmap]
rs16933026	1.00[CEU][hapmap]
rs16933032	1.00[CEU][hapmap]
rs16933034	1.00[CEU][hapmap]
rs16933036	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.96[EUR][1000 genomes]
rs16933039	1.00[CEU][hapmap]
rs16933043	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs16933057	1.00[CEU][hapmap]
rs16933060	1.00[CEU][hapmap]
rs16933071	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16933079	1.00[CEU][hapmap]
rs16933080	1.00[CEU][hapmap]
rs16933092	1.00[CEU][hapmap]
rs16933094	1.00[CEU][hapmap]
rs16933097	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16933125	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs16933138	1.00[CEU][hapmap]
rs16933148	1.00[ASN][1000 genomes]
rs2357998	1.00[CEU][hapmap]
rs35517376	1.00[CEU][hapmap]
rs3779995	1.00[CEU][hapmap]
rs3808602	1.00[CEU][hapmap]
rs3824258	1.00[CEU][hapmap]
rs3857962	1.00[CEU][hapmap]
rs3913346	1.00[CEU][hapmap]
rs3929419	1.00[CEU][hapmap]
rs4345540	1.00[CEU][hapmap]
rs4534119	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs55783506	0.83[ASN][1000 genomes]
rs55784133	0.94[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs56041142	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56100064	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56717011	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56902031	1.00[ASN][1000 genomes]
rs58416462	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58787759	0.94[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs60167783	1.00[ASN][1000 genomes]
rs61167401	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61552467	1.00[ASN][1000 genomes]
rs6472285	1.00[CEU][hapmap]
rs6983632	1.00[CEU][hapmap]
rs6984447	1.00[CEU][hapmap]
rs6984650	1.00[CEU][hapmap]
rs6985273	1.00[CEU][hapmap]
rs6987665	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[MEX][hapmap]
rs6998252	1.00[CEU][hapmap]
rs6998505	1.00[CEU][hapmap]
rs6998777	1.00[CEU][hapmap]
rs7002479	1.00[CEU][hapmap]
rs7003548	1.00[CEU][hapmap]
rs7015619	1.00[CEU][hapmap]
rs7017471	1.00[CEU][hapmap]
rs73691187	1.00[ASN][1000 genomes]
rs73691188	1.00[ASN][1000 genomes]
rs73691189	1.00[ASN][1000 genomes]
rs73691190	1.00[ASN][1000 genomes]
rs73691191	1.00[ASN][1000 genomes]
rs73691597	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7824775	1.00[CEU][hapmap]
rs7840192	1.00[CEU][hapmap]
rs979679	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026746	chr8:67639626-67794164	ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:67688000-67783000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr8:67688200-67738000	Weak transcription	HSMM	muscle
3	chr8:67688400-67730400	Weak transcription	HSMMtube	muscle
4	chr8:67689000-67782600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr8:67691600-67730600	Weak transcription	Fetal Stomach	stomach
6	chr8:67696600-67742400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr8:67696600-67767200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr8:67696800-67783000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr8:67700400-67758600	Weak transcription	Right Ventricle	heart
10	chr8:67707600-67772200	Weak transcription	Thymus	Thymus
11	chr8:67707600-67773000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr8:67707600-67777000	Weak transcription	Primary B cells from peripheral blood	blood
13	chr8:67707600-67783000	Weak transcription	Gastric	stomach
14	chr8:67707800-67730800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr8:67707800-67733800	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr8:67707800-67737800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr8:67707800-67756600	Weak transcription	Colon Smooth Muscle	Colon
18	chr8:67708000-67750600	Weak transcription	Left Ventricle	heart
19	chr8:67708200-67743600	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr8:67708200-67749200	Weak transcription	Stomach Smooth Muscle	stomach
21	chr8:67708400-67747200	Weak transcription	Lung	lung
22	chr8:67711800-67738200	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chr8:67711800-67755600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
24	chr8:67711800-67759200	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr8:67711800-67760000	Weak transcription	Ovary	ovary
26	chr8:67711800-67782600	Weak transcription	HepG2	liver
27	chr8:67712200-67777200	Weak transcription	Esophagus	oesophagus
28	chr8:67715000-67759000	Weak transcription	Primary T helper cells PMA-I stimulated	--
29	chr8:67715800-67759200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
30	chr8:67717200-67734600	Weak transcription	Duodenum Mucosa	Duodenum
31	chr8:67717200-67737200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr8:67717400-67750800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
33	chr8:67717400-67759000	Weak transcription	Rectal Mucosa Donor 29	rectum
34	chr8:67718400-67729000	Weak transcription	HUVEC	blood vessel
35	chr8:67720600-67730600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr8:67723800-67728200	Strong transcription	Monocytes-CD14+_RO01746	blood
37	chr8:67723800-67768400	Weak transcription	Skeletal Muscle Male	skeletal muscle
38	chr8:67725200-67727800	Strong transcription	Primary hematopoietic stem cells	blood
39	chr8:67726000-67730600	Strong transcription	Primary monocytes fromperipheralblood	blood
40	chr8:67726200-67727800	Strong transcription	Primary T helper cells fromperipheralblood	blood
41	chr8:67726200-67731200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr8:67726400-67727800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
43	chr8:67726400-67728000	Strong transcription	Adipose Nuclei	Adipose
44	chr8:67726400-67729600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr8:67726400-67730400	Strong transcription	Fetal Intestine Small	intestine
46	chr8:67726600-67727800	Strong transcription	Primary neutrophils fromperipheralblood	blood
47	chr8:67726600-67727800	Strong transcription	Primary T cells fromperipheralblood	blood
48	chr8:67726600-67728000	Strong transcription	Brain Substantia Nigra	brain
49	chr8:67726600-67729200	Strong transcription	Liver	Liver
50	chr8:67726800-67727800	Strong transcription	Primary B cells from cord blood	blood

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