Variant report

Variant	rs7824775
Chromosome Location	chr8:67890289-67890290
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:67888538..67890759-chr8:67897154..67899273,2	K562	blood:

Variant related genes	Relation type
ENSG00000253223	Chromatin interaction

Extended variants
information (count: 154 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:154)

rs_ID	r²[population]
rs1138476	1.00[CEU][hapmap]
rs11557200	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11985037	1.00[CEU][hapmap]
rs11985572	0.84[ASN][1000 genomes]
rs11986053	1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11986982	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11987310	0.84[ASN][1000 genomes]
rs11988464	0.88[AFR][1000 genomes]
rs11988465	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11989855	1.00[CEU][hapmap]
rs11990461	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[YRI][hapmap];0.84[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs11990636	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs11992069	0.84[ASN][1000 genomes]
rs11992605	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11992626	1.00[CEU][hapmap]
rs11995256	0.84[ASN][1000 genomes]
rs11997189	1.00[CEU][hapmap]
rs11997260	1.00[CEU][hapmap]
rs11997404	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11997967	0.84[ASN][1000 genomes]
rs11998301	0.84[ASN][1000 genomes]
rs12114202	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12114734	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[YRI][hapmap]
rs16919053	0.90[EUR][1000 genomes]
rs16933039	0.84[ASN][1000 genomes]
rs16933057	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs16933060	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs16933065	1.00[CEU][hapmap]
rs16933071	1.00[CEU][hapmap]
rs16933079	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs16933080	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[YRI][hapmap];0.85[AMR][1000 genomes]
rs16933092	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[YRI][hapmap]
rs16933094	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs16933097	1.00[CEU][hapmap];0.96[YRI][hapmap];0.81[AFR][1000 genomes]
rs16933106	1.00[JPT][hapmap]
rs16933125	1.00[CEU][hapmap]
rs16933132	1.00[JPT][hapmap]
rs16933138	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16933139	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16933147	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16933148	1.00[CEU][hapmap]
rs16933160	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs16933162	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16933170	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16933173	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16933178	1.00[CEU][hapmap]
rs16933182	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[EUR][1000 genomes]
rs16933190	0.95[EUR][1000 genomes]
rs2168542	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2290585	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.95[EUR][1000 genomes]
rs2305672	0.90[EUR][1000 genomes]
rs2305673	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28547325	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs35517376	0.84[ASN][1000 genomes]
rs35809374	0.82[AMR][1000 genomes]
rs3779995	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3780131	0.90[EUR][1000 genomes]
rs3857962	0.84[ASN][1000 genomes]
rs3929419	0.84[ASN][1000 genomes]
rs4534119	1.00[CEU][hapmap]
rs4592015	1.00[JPT][hapmap]
rs4613982	0.84[ASN][1000 genomes]
rs55662680	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55737416	0.90[EUR][1000 genomes]
rs55745066	0.95[EUR][1000 genomes]
rs55865037	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55893527	0.84[ASN][1000 genomes]
rs55983978	0.90[EUR][1000 genomes]
rs55986624	0.85[EUR][1000 genomes]
rs56056216	0.84[ASN][1000 genomes]
rs56101466	0.90[EUR][1000 genomes]
rs56215867	0.84[ASN][1000 genomes]
rs57101332	0.90[EUR][1000 genomes]
rs57867847	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57894537	0.84[ASN][1000 genomes]
rs58434561	0.84[ASN][1000 genomes]
rs58448590	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58653469	0.84[ASN][1000 genomes]
rs58991268	0.84[ASN][1000 genomes]
rs59335949	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59469156	0.84[ASN][1000 genomes]
rs59634730	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60324950	0.90[EUR][1000 genomes]
rs60666237	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs60741740	0.84[ASN][1000 genomes]
rs60773515	0.84[ASN][1000 genomes]
rs60894518	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61080934	0.84[ASN][1000 genomes]
rs61085456	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs61193782	0.90[EUR][1000 genomes]
rs6472285	0.84[ASN][1000 genomes]
rs6472289	0.91[AMR][1000 genomes]
rs6651278	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs6981761	0.84[ASN][1000 genomes]
rs6982137	0.84[ASN][1000 genomes]
rs6982699	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6983632	0.84[ASN][1000 genomes]
rs6984447	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[YRI][hapmap];0.84[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs6984568	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6984597	1.00[JPT][hapmap]
rs6984650	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6985273	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[YRI][hapmap];0.85[AMR][1000 genomes]
rs6987597	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6987624	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6990298	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6991974	0.90[EUR][1000 genomes]
rs6998170	1.00[JPT][hapmap]
rs6998290	1.00[JPT][hapmap]
rs6998777	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs7000650	1.00[JPT][hapmap]
rs7002479	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs7003018	1.00[JPT][hapmap]
rs7004549	1.00[CEU][hapmap]
rs7005014	1.00[JPT][hapmap]
rs7009678	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7015619	0.84[ASN][1000 genomes]
rs7017471	0.84[ASN][1000 genomes]
rs73691182	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73691185	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73691186	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73691192	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73691193	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73691565	0.84[ASN][1000 genomes]
rs73691571	0.84[ASN][1000 genomes]
rs73691572	0.84[ASN][1000 genomes]
rs73691578	0.84[ASN][1000 genomes]
rs73691579	0.84[ASN][1000 genomes]
rs73691582	0.84[ASN][1000 genomes]
rs73691586	0.84[ASN][1000 genomes]
rs73691595	0.84[ASN][1000 genomes]
rs73693124	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73693135	0.84[EUR][1000 genomes]
rs73693152	0.90[EUR][1000 genomes]
rs73693153	0.90[EUR][1000 genomes]
rs73693615	0.82[AMR][1000 genomes]
rs73693631	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs73693632	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs7461383	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7812425	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7812510	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7815142	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs7815863	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7816827	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7819894	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7819895	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7820403	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs7828748	1.00[JPT][hapmap]
rs7833373	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7833956	1.00[JPT][hapmap]
rs7834516	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.95[EUR][1000 genomes]
rs7841884	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7842770	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs979679	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[YRI][hapmap];0.82[AMR][1000 genomes]
rs9918869	0.84[ASN][1000 genomes]

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Chromatin state (count:0 , 50 per page) page:

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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