Variant report

Variant	rs11988465
Chromosome Location	chr8:67909952-67909953
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:67909848..67911700-chr8:67911830..67913681,2	MCF-7	breast:
2	chr8:67835883..67838012-chr8:67908858..67911851,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000245910	Chromatin interaction

Extended variants
information (count: 115 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:114)

rs_ID	r²[population]
rs11557200	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11985572	0.84[ASN][1000 genomes]
rs11986053	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11986982	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11988464	0.87[AFR][1000 genomes]
rs11990461	0.82[AMR][1000 genomes]
rs11990636	0.84[ASN][1000 genomes]
rs11992069	0.84[ASN][1000 genomes]
rs11992605	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11995256	0.84[ASN][1000 genomes]
rs11997404	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11997967	0.84[ASN][1000 genomes]
rs11998301	0.84[ASN][1000 genomes]
rs12114202	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16919053	0.90[EUR][1000 genomes]
rs16933057	0.84[ASN][1000 genomes]
rs16933060	0.84[ASN][1000 genomes]
rs16933138	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16933139	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16933147	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16933160	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs16933162	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16933170	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16933173	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16933182	0.97[EUR][1000 genomes]
rs16933190	0.95[EUR][1000 genomes]
rs16933204	0.85[EUR][1000 genomes]
rs16933214	0.85[EUR][1000 genomes]
rs2168542	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2290585	0.95[EUR][1000 genomes]
rs2305672	0.90[EUR][1000 genomes]
rs2305673	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28547325	0.82[EUR][1000 genomes]
rs35517376	0.84[ASN][1000 genomes]
rs3779995	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3780131	0.90[EUR][1000 genomes]
rs3857962	0.84[ASN][1000 genomes]
rs3929419	0.84[ASN][1000 genomes]
rs4613982	0.84[ASN][1000 genomes]
rs55662680	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55737416	0.90[EUR][1000 genomes]
rs55745066	0.95[EUR][1000 genomes]
rs55865037	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55893527	0.84[ASN][1000 genomes]
rs55983978	0.90[EUR][1000 genomes]
rs55986624	0.85[EUR][1000 genomes]
rs56056216	0.84[ASN][1000 genomes]
rs56101466	0.90[EUR][1000 genomes]
rs56215867	0.84[ASN][1000 genomes]
rs56858183	0.85[EUR][1000 genomes]
rs57101332	0.90[EUR][1000 genomes]
rs57867847	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58448590	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58991268	0.84[ASN][1000 genomes]
rs59335949	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59469156	0.84[ASN][1000 genomes]
rs59634730	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59870074	0.81[EUR][1000 genomes]
rs60324950	0.90[EUR][1000 genomes]
rs60666237	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs60741740	0.84[ASN][1000 genomes]
rs60773515	0.84[ASN][1000 genomes]
rs60894518	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61085456	0.82[AMR][1000 genomes]
rs61193782	0.90[EUR][1000 genomes]
rs6472285	0.84[ASN][1000 genomes]
rs6472289	0.82[AMR][1000 genomes]
rs6981761	0.84[ASN][1000 genomes]
rs6982137	0.84[ASN][1000 genomes]
rs6982699	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6983632	0.84[ASN][1000 genomes]
rs6984447	0.82[AMR][1000 genomes]
rs6984568	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6984650	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6987597	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6987624	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6990298	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6991974	0.90[EUR][1000 genomes]
rs6998777	0.84[ASN][1000 genomes]
rs7002479	0.84[ASN][1000 genomes]
rs7015619	0.84[ASN][1000 genomes]
rs7017471	0.84[ASN][1000 genomes]
rs73691182	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73691185	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73691186	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73691192	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73691193	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73691571	0.84[ASN][1000 genomes]
rs73691572	0.84[ASN][1000 genomes]
rs73691578	0.84[ASN][1000 genomes]
rs73691579	0.84[ASN][1000 genomes]
rs73691582	0.84[ASN][1000 genomes]
rs73691586	0.84[ASN][1000 genomes]
rs73691595	0.84[ASN][1000 genomes]
rs73693124	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73693135	0.84[EUR][1000 genomes]
rs73693152	0.90[EUR][1000 genomes]
rs73693153	0.90[EUR][1000 genomes]
rs73693631	0.82[AMR][1000 genomes]
rs73693632	0.82[AMR][1000 genomes]
rs7461383	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7812425	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7812510	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7815142	0.82[AMR][1000 genomes]
rs7815863	0.82[EUR][1000 genomes]
rs7816827	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7819894	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7819895	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7820403	0.82[AMR][1000 genomes]
rs7824775	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7833373	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7834516	0.95[EUR][1000 genomes]
rs7841884	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7842770	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1802652	chr8:67894007-67964309	Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:67909800-67912000	Enhancers	Primary neutrophils fromperipheralblood	blood

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