Variant report

Variant	rs55737416
Chromosome Location	chr8:68138663-68138664
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:68127338..68130278-chr8:68135594..68139376,3	K562	blood:

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10504399	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11557200	0.90[EUR][1000 genomes]
rs11986053	0.90[EUR][1000 genomes]
rs11986982	0.81[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs11988465	0.90[EUR][1000 genomes]
rs11997404	0.81[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs12114202	0.90[EUR][1000 genomes]
rs16919053	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16933138	0.90[EUR][1000 genomes]
rs16933139	0.90[EUR][1000 genomes]
rs16933147	0.90[EUR][1000 genomes]
rs16933160	0.85[EUR][1000 genomes]
rs16933162	0.90[EUR][1000 genomes]
rs16933170	0.90[EUR][1000 genomes]
rs16933173	0.81[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs16933182	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16933190	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16933204	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16933214	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1821026	0.80[AFR][1000 genomes]
rs2168542	0.90[EUR][1000 genomes]
rs2290585	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2305672	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2305673	0.90[EUR][1000 genomes]
rs3780131	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55662680	0.90[EUR][1000 genomes]
rs55745066	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55865037	0.82[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs55983978	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55986624	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56101466	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56858183	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57101332	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57867847	0.90[EUR][1000 genomes]
rs58448590	0.90[EUR][1000 genomes]
rs58715460	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59335949	0.90[EUR][1000 genomes]
rs59634730	0.90[EUR][1000 genomes]
rs59870074	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60324950	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60894518	0.81[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs61193782	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6984568	0.90[EUR][1000 genomes]
rs6987597	0.90[EUR][1000 genomes]
rs6987624	0.90[EUR][1000 genomes]
rs6990298	0.90[EUR][1000 genomes]
rs6991974	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73691182	0.90[EUR][1000 genomes]
rs73691185	0.90[EUR][1000 genomes]
rs73691186	0.90[EUR][1000 genomes]
rs73691192	0.90[EUR][1000 genomes]
rs73691193	0.90[EUR][1000 genomes]
rs73693124	0.90[EUR][1000 genomes]
rs73693135	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73693152	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73693153	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7461383	0.81[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs7812425	0.83[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs7812510	0.87[EUR][1000 genomes]
rs7816827	0.90[EUR][1000 genomes]
rs7819894	0.87[EUR][1000 genomes]
rs7819895	0.87[EUR][1000 genomes]
rs7822754	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7824775	0.90[EUR][1000 genomes]
rs7833373	0.82[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs7834516	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7841884	0.90[EUR][1000 genomes]
rs7846677	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:68100800-68152600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr8:68101200-68144200	Strong transcription	Liver	Liver
3	chr8:68101200-68144800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr8:68103000-68140600	Strong transcription	Fetal Intestine Large	intestine
5	chr8:68103000-68151400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr8:68103600-68139600	Strong transcription	Primary T cells from cord blood	blood
7	chr8:68103600-68158200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr8:68104600-68142400	Strong transcription	Adipose Nuclei	Adipose
9	chr8:68104600-68193000	Strong transcription	Primary neutrophils fromperipheralblood	blood
10	chr8:68104600-68215600	Strong transcription	Monocytes-CD14+_RO01746	blood
11	chr8:68104800-68151200	Strong transcription	Primary T cells fromperipheralblood	blood
12	chr8:68104800-68152000	Strong transcription	Fetal Thymus	thymus
13	chr8:68104800-68159600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr8:68104800-68182400	Strong transcription	Primary T helper cells fromperipheralblood	blood
15	chr8:68105000-68140000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
16	chr8:68105000-68140600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr8:68105000-68184400	Strong transcription	Primary monocytes fromperipheralblood	blood
18	chr8:68105600-68158800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
19	chr8:68106600-68140600	Strong transcription	Placenta	Placenta
20	chr8:68107200-68139800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr8:68110600-68141400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
22	chr8:68113000-68172600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr8:68115800-68140800	Strong transcription	HUES64 Cell Line	embryonic stem cell
24	chr8:68117000-68154200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr8:68118000-68143600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr8:68119000-68157200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr8:68123400-68145600	Weak transcription	Pancreatic Islets	Pancreatic Islet
28	chr8:68126400-68140800	Strong transcription	HUES48 Cell Line	embryonic stem cell
29	chr8:68127600-68148800	Weak transcription	NHEK	skin
30	chr8:68128000-68154200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr8:68128200-68148800	Weak transcription	Pancreas	Pancrea
32	chr8:68129000-68154000	Weak transcription	Gastric	stomach
33	chr8:68130400-68148800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr8:68131200-68139800	Strong transcription	Left Ventricle	heart
35	chr8:68131800-68142400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
36	chr8:68132200-68139800	Strong transcription	Fetal Muscle Leg	muscle
37	chr8:68132400-68142600	Strong transcription	Fetal Muscle Trunk	muscle
38	chr8:68132600-68139600	Strong transcription	Thymus	Thymus
39	chr8:68132600-68142400	Strong transcription	Primary B cells from peripheral blood	blood
40	chr8:68132800-68139800	Strong transcription	Stomach Smooth Muscle	stomach
41	chr8:68132800-68140200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
42	chr8:68133200-68140400	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
43	chr8:68134400-68139800	Strong transcription	Cortex derived primary cultured neurospheres	brain
44	chr8:68134400-68141800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr8:68134600-68139800	Strong transcription	Fetal Lung	lung
46	chr8:68134600-68140000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
47	chr8:68134600-68140400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr8:68134600-68145600	Strong transcription	Duodenum Mucosa	Duodenum
49	chr8:68134800-68140000	Strong transcription	Duodenum Smooth Muscle	Duodenum
50	chr8:68134800-68141600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links