Variant report

Variant	rs957655
Chromosome Location	chr8:67409841-67409842
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10095792	0.84[ASN][1000 genomes]
rs10283103	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs10504393	1.00[CHB][hapmap]
rs11986831	1.00[CHB][hapmap]
rs11987311	1.00[CHB][hapmap]
rs11988213	1.00[CHB][hapmap]
rs11990322	1.00[CHB][hapmap]
rs11990331	1.00[CHB][hapmap]
rs11992252	1.00[CHB][hapmap]
rs11993306	1.00[CHB][hapmap]
rs11993354	1.00[CHB][hapmap]
rs11998194	1.00[CHB][hapmap]
rs16932983	1.00[CHB][hapmap]
rs16932985	1.00[CHB][hapmap]
rs16932996	1.00[CHB][hapmap]
rs16933013	1.00[CHB][hapmap]
rs16933026	1.00[CHB][hapmap]
rs16933032	1.00[CHB][hapmap]
rs2358000	1.00[CHB][hapmap]
rs2718997	1.00[JPT][hapmap]
rs3808602	1.00[CHB][hapmap]
rs3824258	1.00[CHB][hapmap]
rs4345540	1.00[CHB][hapmap]
rs4386964	0.84[ASN][1000 genomes]
rs56001676	0.84[ASN][1000 genomes]
rs56044023	0.84[ASN][1000 genomes]
rs6982202	1.00[CHB][hapmap]
rs6986940	1.00[CHB][hapmap]
rs6998505	1.00[CHB][hapmap]
rs7003548	1.00[CHB][hapmap]
rs7008740	1.00[CHB][hapmap]
rs7840192	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446467	chr8:66749863-67667068	Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs957655	ADHFE1	cis	parietal	SCAN

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:67406800-67419400	Weak transcription	Liver	Liver
2	chr8:67407000-67417400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr8:67407200-67410800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr8:67407200-67410800	Weak transcription	HSMM	muscle
5	chr8:67407200-67410800	Weak transcription	NH-A	brain
6	chr8:67407200-67410800	Weak transcription	Osteobl	bone
7	chr8:67407200-67411000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr8:67407200-67411000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr8:67407200-67411800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr8:67407200-67419400	Weak transcription	Aorta	Aorta
11	chr8:67407400-67410800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr8:67407400-67410800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr8:67407400-67416200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr8:67407600-67410800	Weak transcription	HepG2	liver
15	chr8:67407600-67415400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr8:67408200-67410400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr8:67408200-67410800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr8:67408200-67415400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr8:67409000-67410800	Weak transcription	Brain Angular Gyrus	brain
20	chr8:67409600-67410600	Weak transcription	Brain Cingulate Gyrus	brain
21	chr8:67409800-67410400	Weak transcription	Brain Substantia Nigra	brain
22	chr8:67409800-67410800	Weak transcription	Brain Hippocampus Middle	brain
23	chr8:67409800-67411000	Weak transcription	Brain Anterior Caudate	brain
24	chr8:67409800-67413600	Weak transcription	Brain Inferior Temporal Lobe	brain

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