Variant report

Variant	rs17425781
Chromosome Location	chr8:68166980-68166981
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:68165216..68168003-chr8:68172211..68176265,3	K562	blood:

Extended variants
information (count: 52 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10105795	0.85[ASN][1000 genomes]
rs10957381	0.85[CHB][hapmap];0.84[CHD][hapmap]
rs10957384	0.86[CEU][hapmap];0.95[CHB][hapmap];0.88[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.83[TSI][hapmap];0.93[ASN][1000 genomes]
rs11774715	0.93[ASN][1000 genomes]
rs11779287	0.93[ASN][1000 genomes]
rs11986169	0.84[ASN][1000 genomes]
rs11995348	0.82[ASN][1000 genomes]
rs12674570	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12674848	0.92[ASN][1000 genomes]
rs12675528	0.84[ASN][1000 genomes]
rs12678025	0.85[ASN][1000 genomes]
rs12679614	0.85[ASN][1000 genomes]
rs12681292	0.80[ASN][1000 genomes]
rs12681862	1.00[CHB][hapmap];0.92[CHD][hapmap];0.81[JPT][hapmap]
rs12682412	0.93[ASN][1000 genomes]
rs13255070	0.91[ASN][1000 genomes]
rs13264059	0.84[AFR][1000 genomes]
rs13264289	0.80[ASN][1000 genomes]
rs13267015	0.93[ASN][1000 genomes]
rs13275593	0.81[CEU][hapmap];0.84[CHD][hapmap];0.92[GIH][hapmap];0.95[JPT][hapmap];0.83[TSI][hapmap];0.80[ASN][1000 genomes]
rs13280556	0.82[ASN][1000 genomes]
rs1544986	0.86[CEU][hapmap];0.95[CHB][hapmap];0.90[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.83[TSI][hapmap];1.00[YRI][hapmap];0.91[ASN][1000 genomes]
rs1821026	0.85[ASN][1000 genomes]
rs28640047	0.85[ASN][1000 genomes]
rs34132973	0.92[ASN][1000 genomes]
rs34345865	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34711984	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35480743	0.86[CEU][hapmap];0.95[CHB][hapmap];0.91[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.83[TSI][hapmap];0.92[ASN][1000 genomes]
rs35754047	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35904049	0.84[ASN][1000 genomes]
rs56186469	0.85[ASN][1000 genomes]
rs57179217	0.88[ASN][1000 genomes]
rs60196076	0.84[ASN][1000 genomes]
rs6472297	0.86[CEU][hapmap];0.95[CHB][hapmap];0.90[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.83[TSI][hapmap];0.88[ASN][1000 genomes]
rs68086555	0.94[ASN][1000 genomes]
rs6987724	0.84[ASN][1000 genomes]
rs6993324	0.85[ASN][1000 genomes]
rs7002191	0.92[ASN][1000 genomes]
rs7002622	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.94[MEX][hapmap];0.94[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs718348	0.81[CEU][hapmap];0.81[JPT][hapmap]
rs72654960	0.85[ASN][1000 genomes]
rs7464980	0.93[ASN][1000 genomes]
rs7812777	0.86[CEU][hapmap];0.84[ASN][1000 genomes]
rs7812887	0.92[ASN][1000 genomes]
rs7813810	0.80[CHB][hapmap];0.86[CHD][hapmap];0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs7817641	0.81[ASN][1000 genomes]
rs7818520	0.85[ASN][1000 genomes]
rs7823436	0.85[ASN][1000 genomes]
rs7830183	0.82[ASN][1000 genomes]
rs7841468	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7841756	0.81[CEU][hapmap];0.81[CHB][hapmap];0.84[CHD][hapmap];0.92[GIH][hapmap];0.95[JPT][hapmap];0.83[TSI][hapmap];0.82[ASN][1000 genomes]
rs7844125	0.85[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17425781	C8orf34	cis	parietal	SCAN

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:68104600-68193000	Strong transcription	Primary neutrophils fromperipheralblood	blood
2	chr8:68104600-68215600	Strong transcription	Monocytes-CD14+_RO01746	blood
3	chr8:68104800-68182400	Strong transcription	Primary T helper cells fromperipheralblood	blood
4	chr8:68105000-68184400	Strong transcription	Primary monocytes fromperipheralblood	blood
5	chr8:68113000-68172600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr8:68135200-68184400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr8:68139000-68178000	Weak transcription	Small Intestine	intestine
8	chr8:68146000-68168200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
9	chr8:68149600-68167200	Weak transcription	Fetal Heart	heart
10	chr8:68149800-68173000	Weak transcription	Psoas Muscle	Psoas
11	chr8:68153600-68181000	Strong transcription	Rectal Mucosa Donor 31	rectum
12	chr8:68153800-68168400	Strong transcription	Fetal Thymus	thymus
13	chr8:68154000-68170800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr8:68154800-68175600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr8:68155000-68179200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr8:68155200-68172400	Weak transcription	Stomach Mucosa	stomach
17	chr8:68155200-68173600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr8:68155400-68167400	Weak transcription	Brain Angular Gyrus	brain
19	chr8:68155600-68173200	Weak transcription	Esophagus	oesophagus
20	chr8:68155600-68175400	Weak transcription	Aorta	Aorta
21	chr8:68155600-68175400	Weak transcription	Hela-S3	cervix
22	chr8:68155600-68193800	Strong transcription	HUES64 Cell Line	embryonic stem cell
23	chr8:68155800-68226000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
24	chr8:68157600-68181400	Strong transcription	Primary B cells from cord blood	blood
25	chr8:68157800-68181000	Strong transcription	Primary T helper cells PMA-I stimulated	--
26	chr8:68158000-68181400	Strong transcription	Primary T cells fromperipheralblood	blood
27	chr8:68159000-68180600	Strong transcription	Liver	Liver
28	chr8:68159000-68221400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
29	chr8:68159200-68168200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr8:68159400-68181000	Strong transcription	Primary T cells from cord blood	blood
31	chr8:68159600-68180800	Strong transcription	HUES6 Cell Line	embryonic stem cell
32	chr8:68159600-68180800	Strong transcription	Dnd41	blood
33	chr8:68159600-68181000	Strong transcription	Primary B cells from peripheral blood	blood
34	chr8:68159800-68170400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
35	chr8:68159800-68179800	Strong transcription	Adipose Nuclei	Adipose
36	chr8:68159800-68180000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
37	chr8:68160000-68178800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr8:68160400-68170400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
39	chr8:68160400-68181000	Strong transcription	HUES48 Cell Line	embryonic stem cell
40	chr8:68160600-68168400	Strong transcription	Primary hematopoietic stem cells	blood
41	chr8:68160600-68173400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr8:68160600-68173600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr8:68160600-68173800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
44	chr8:68160800-68181000	Strong transcription	Duodenum Mucosa	Duodenum
45	chr8:68161000-68181200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr8:68161400-68175000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr8:68161400-68181200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
48	chr8:68161600-68167800	Strong transcription	Primary T helper memory cells from peripheral blood 2	blood
49	chr8:68161600-68181000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
50	chr8:68162000-68181400	Strong transcription	Rectal Mucosa Donor 29	rectum

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