Variant report

Variant	rs13279492
Chromosome Location	chr8:119909351-119909352
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:119890715..119891617-chr8:119908895..119909909,3	MCF-7	breast:
2	chr8:119901946..119903477-chr8:119908187..119910521,2	MCF-7	breast:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11573909	0.84[EUR][1000 genomes]
rs11573916	0.84[EUR][1000 genomes]
rs11573926	0.89[EUR][1000 genomes]
rs11573927	0.88[EUR][1000 genomes]
rs11573935	0.90[EUR][1000 genomes]
rs11573938	0.93[CEU][hapmap];0.89[GIH][hapmap];0.91[TSI][hapmap];0.90[EUR][1000 genomes]
rs11573953	0.90[EUR][1000 genomes]
rs1564857	0.84[EUR][1000 genomes]
rs1564858	0.93[CEU][hapmap];0.92[GIH][hapmap];0.86[TSI][hapmap];0.83[EUR][1000 genomes]
rs2228568	0.90[EUR][1000 genomes]
rs35482628	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4446765	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4532619	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6469783	0.93[CEU][hapmap];0.90[EUR][1000 genomes]
rs6469784	0.90[EUR][1000 genomes]
rs7825904	0.83[GIH][hapmap]
rs7844539	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831444	chr8:119757355-119915966	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
2	nsv891415	chr8:119886923-119921354	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:119908200-119910000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr8:119908200-119910200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr8:119908200-119910400	Enhancers	NHLF	lung
4	chr8:119908200-119910600	Enhancers	Hela-S3	cervix
5	chr8:119908200-119915200	Enhancers	Fetal Intestine Small	intestine
6	chr8:119908400-119909400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr8:119908400-119909800	Enhancers	HSMM	muscle
8	chr8:119908400-119910000	Enhancers	Osteobl	bone
9	chr8:119908400-119910200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr8:119908400-119910200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr8:119908400-119910200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr8:119908400-119910200	Enhancers	Muscle Satellite Cultured Cells	--
13	chr8:119908400-119910200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr8:119908400-119910200	Enhancers	NHDF-Ad	bronchial
15	chr8:119908400-119910200	Enhancers	NHEK	skin
16	chr8:119908400-119910600	Enhancers	HMEC	breast
17	chr8:119908600-119910000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr8:119908600-119911000	Enhancers	Pancreatic Islets	Pancreatic Islet
19	chr8:119908800-119910000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
20	chr8:119908800-119910000	Enhancers	HUVEC	blood vessel
21	chr8:119909000-119909400	Enhancers	Pancreas	Pancrea
22	chr8:119909000-119909800	Enhancers	Rectal Mucosa Donor 31	rectum
23	chr8:119909000-119912000	Enhancers	Fetal Intestine Large	intestine
24	chr8:119909200-119914400	Weak transcription	Aorta	Aorta
25	chr8:119909200-119916600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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