Variant report

Variant	rs1328004
Chromosome Location	chr9:14517979-14517980
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10756570	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10810169	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10810170	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10810171	0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10961554	0.80[ASN][1000 genomes]
rs4142079	0.85[ASN][1000 genomes]
rs4741390	0.80[ASN][1000 genomes]
rs7851867	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7854892	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7858564	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029491	chr9:14033607-14942373	Enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv915804	chr9:14182608-14903050	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv916811	chr9:14210978-14542068	Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	nsv831517	chr9:14512924-14738206	Enhancers Genic enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:14515000-14518000	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr9:14515200-14518000	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr9:14515200-14518400	Enhancers	Fetal Muscle Leg	muscle
4	chr9:14515400-14519000	Enhancers	Brain Germinal Matrix	brain
5	chr9:14515800-14518000	Enhancers	Fetal Brain Female	brain
6	chr9:14516000-14518000	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr9:14516200-14521000	Weak transcription	Psoas Muscle	Psoas
8	chr9:14516400-14518800	Enhancers	HSMMtube	muscle
9	chr9:14516400-14519800	Enhancers	K562	blood
10	chr9:14516600-14518000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr9:14516600-14520400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr9:14516800-14518000	Enhancers	H9 Cell Line	embryonic stem cell
13	chr9:14517200-14519000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr9:14517600-14519200	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr9:14517600-14520200	Weak transcription	HSMM	muscle
16	chr9:14517800-14520400	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr9:14517800-14520800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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