Variant report

Variant	rs13281543
Chromosome Location	chr8:59751994-59751995
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10504266	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10504267	0.89[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12542489	0.94[CEU][hapmap];0.89[EUR][1000 genomes]
rs13260651	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1349115	0.95[CEU][hapmap];0.89[EUR][1000 genomes]
rs1375187	0.90[CEU][hapmap];0.88[EUR][1000 genomes]
rs1375188	0.90[CEU][hapmap];0.88[EUR][1000 genomes]
rs2726552	0.82[JPT][hapmap]
rs2875868	0.82[EUR][1000 genomes]
rs34404259	0.88[EUR][1000 genomes]
rs4737524	0.82[EUR][1000 genomes]
rs4738721	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4738722	0.90[CEU][hapmap];0.88[EUR][1000 genomes]
rs4738723	0.81[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4738724	0.90[CEU][hapmap];0.88[EUR][1000 genomes]
rs4738725	0.88[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60665035	0.87[EUR][1000 genomes]
rs7017464	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7819721	0.90[CEU][hapmap];0.85[EUR][1000 genomes]
rs7820629	0.81[EUR][1000 genomes]
rs7826573	0.88[EUR][1000 genomes]
rs7838499	0.82[EUR][1000 genomes]
rs7844725	0.90[CEU][hapmap];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890938	chr8:59355053-59809785	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59715200-59757400	Weak transcription	Fetal Intestine Large	intestine
2	chr8:59720600-59754800	Weak transcription	Small Intestine	intestine
3	chr8:59720800-59762600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr8:59722400-59757200	Strong transcription	Dnd41	blood
5	chr8:59729600-59754800	Weak transcription	Gastric	stomach
6	chr8:59730800-59770800	Strong transcription	Fetal Thymus	thymus
7	chr8:59732200-59755200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr8:59739000-59753200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr8:59745600-59770800	Weak transcription	Fetal Kidney	kidney
10	chr8:59745800-59770800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr8:59746000-59753800	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr8:59746400-59773200	Weak transcription	Fetal Intestine Small	intestine
13	chr8:59746600-59752800	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr8:59746600-59754800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr8:59746600-59763600	Weak transcription	Primary T helper cells PMA-I stimulated	--
16	chr8:59746800-59763600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr8:59747000-59755000	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr8:59747000-59755800	Weak transcription	Fetal Lung	lung
19	chr8:59747000-59757600	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr8:59747200-59754800	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr8:59747400-59753200	Weak transcription	A549	lung
22	chr8:59747400-59753600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr8:59747400-59754400	Weak transcription	NH-A	brain
24	chr8:59747400-59754400	Weak transcription	Osteobl	bone
25	chr8:59747400-59754600	Weak transcription	NHLF	lung
26	chr8:59747400-59755200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr8:59747400-59757800	Weak transcription	Rectal Smooth Muscle	rectum
28	chr8:59747400-59760400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr8:59747400-59770800	Weak transcription	Pancreas	Pancrea
30	chr8:59747600-59753800	Weak transcription	Muscle Satellite Cultured Cells	--
31	chr8:59747600-59754400	Weak transcription	NHDF-Ad	bronchial
32	chr8:59747600-59754600	Weak transcription	Sigmoid Colon	Sigmoid Colon
33	chr8:59748400-59753600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr8:59748600-59752400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
35	chr8:59749200-59757600	Weak transcription	Stomach Smooth Muscle	stomach
36	chr8:59749200-59762600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
37	chr8:59750800-59752800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
38	chr8:59750800-59753200	Weak transcription	Fetal Stomach	stomach
39	chr8:59750800-59754000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr8:59750800-59754600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr8:59750800-59754600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr8:59750800-59757600	Weak transcription	Rectal Mucosa Donor 31	rectum
43	chr8:59750800-59760000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
44	chr8:59750800-59761800	Weak transcription	HUES48 Cell Line	embryonic stem cell
45	chr8:59750800-59762600	Weak transcription	Duodenum Mucosa	Duodenum
46	chr8:59750800-59771000	Weak transcription	H1 Cell Line	embryonic stem cell
47	chr8:59751000-59752200	Weak transcription	Primary T cells from cord blood	blood
48	chr8:59751000-59752200	Weak transcription	Primary T cells fromperipheralblood	blood
49	chr8:59751000-59752600	Weak transcription	Thymus	Thymus
50	chr8:59751000-59754400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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