Variant report

Variant	rs7838499
Chromosome Location	chr8:59781086-59781087
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10504266	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12542489	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13260651	0.82[GIH][hapmap];0.82[MEX][hapmap];0.93[TSI][hapmap];0.82[EUR][1000 genomes]
rs13281543	0.82[EUR][1000 genomes]
rs1349115	0.81[CEU][hapmap];0.90[MEX][hapmap];0.95[TSI][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1375187	0.85[CEU][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1375188	0.85[CEU][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2875868	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34404259	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4737524	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4738721	0.82[MEX][hapmap];0.93[TSI][hapmap];0.82[EUR][1000 genomes]
rs4738722	0.85[CEU][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4738723	0.82[GIH][hapmap];0.87[TSI][hapmap]
rs4738724	0.85[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];0.89[YRI][hapmap];0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60665035	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7017464	0.82[GIH][hapmap];0.82[MEX][hapmap];0.89[TSI][hapmap];0.80[EUR][1000 genomes]
rs7819721	0.85[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7820629	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7826573	0.90[CHB][hapmap];0.94[JPT][hapmap];0.93[YRI][hapmap];0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7844725	0.87[CEU][hapmap];0.89[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890938	chr8:59355053-59809785	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59764200-59806400	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr8:59771400-59811000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr8:59771600-59794000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr8:59772600-59794400	Weak transcription	Small Intestine	intestine
5	chr8:59773400-59808200	Weak transcription	Thymus	Thymus
6	chr8:59773800-59785000	Weak transcription	Dnd41	blood
7	chr8:59774600-59789600	Weak transcription	Primary T cells from cord blood	blood
8	chr8:59777800-59788200	Weak transcription	Stomach Smooth Muscle	stomach
9	chr8:59777800-59795000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr8:59778200-59783200	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr8:59778200-59789000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr8:59779400-59788800	Weak transcription	HUVEC	blood vessel
13	chr8:59779800-59781400	Strong transcription	Fetal Thymus	thymus
14	chr8:59780400-59785200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr8:59780400-59785800	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr8:59780400-59790000	Weak transcription	HSMM	muscle
17	chr8:59780600-59785400	Weak transcription	Osteobl	bone
18	chr8:59780600-59791600	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr8:59780800-59788800	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr8:59781000-59781200	ZNF genes & repeats	Primary hematopoietic stem cells	blood

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