Variant report

No data

(count:20 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:125965221..125967859-chr8:126009015..126011042,3	MCF-7	breast:
2	chr8:125660023..125660895-chr8:125965641..125966178,2	MCF-7	breast:
3	chr8:125939281..125940227-chr8:125965680..125966604,3	MCF-7	breast:
4	chr8:125935909..125938271-chr8:125963994..125966987,3	MCF-7	breast:
5	chr8:125964835..125966928-chr8:125968756..125971401,2	K562	blood:
6	chr8:125826052..125829315-chr8:125964777..125971300,8	K562	blood:
7	chr8:125604891..125605852-chr8:125965621..125966812,9	MCF-7	breast:
8	chr8:125964812..125967573-chr8:125978469..125981385,2	MCF-7	breast:
9	chr8:125921782..125924509-chr8:125964835..125967359,2	K562	blood:
10	chr8:125955052..125957030-chr8:125964288..125966212,2	MCF-7	breast:
11	chr8:125900749..125901481-chr8:125965624..125966220,2	MCF-7	breast:
12	chr8:125869320..125871335-chr8:125964557..125966741,2	MCF-7	breast:
13	chr8:125604776..125605783-chr8:125965786..125967049,3	MCF-7	breast:
14	chr8:125964340..125966709-chr8:125985422..125987318,2	K562	blood:
15	chr8:125853620..125856478-chr8:125964634..125966898,2	K562	blood:
16	chr8:125550000..125552039-chr8:125965620..125968029,2	MCF-7	breast:
17	chr8:125908171..125909770-chr8:125964003..125966026,2	MCF-7	breast:
18	chr8:125826052..125832853-chr8:125963334..125969415,10	K562	blood:
19	chr8:125568463..125569935-chr8:125965743..125966743,5	MCF-7	breast:
20	chr8:125739084..125741544-chr8:125964517..125966758,2	MCF-7	breast:

No data

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1427086	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1834716	0.91[ASN][1000 genomes]
rs2590669	0.90[ASN][1000 genomes]
rs2725879	0.93[ASN][1000 genomes]
rs2725881	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4634661	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891434	chr8:125630655-126324432	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
2	nsv1030803	chr8:125868684-125969635	Weak transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
3	nsv1024405	chr8:125868684-125971035	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
4	nsv1020502	chr8:125868684-125972572	Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:125960000-125969400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:125965600-125966400	Enhancers	K562	blood

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