Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	KAP1	chr8:125958623-125959953	K562	blood:	n/a	n/a
2	FOSL1	chr8:125959023-125959659	HCT-116	colon:	n/a	chr8:125959308-125959319
3	JUND	chr8:125959141-125959514	Hela-S3	cervix:	n/a	chr8:125959308-125959319
4	ZNF143	chr8:125959160-125959531	K562	blood:	n/a	n/a
5	CBX3	chr8:125959074-125959521	K562	blood:	n/a	n/a
6	USF1	chr8:125959169-125959542	HCT-116	colon:	n/a	n/a
7	HCFC1	chr8:125959190-125959530	K562	blood:	n/a	n/a
8	JUND	chr8:125959186-125959535	HCT-116	colon:	n/a	chr8:125959308-125959319
9	TRIM28	chr8:125959002-125959610	K562	blood:	n/a	n/a
10	CBX3	chr8:125959175-125959580	HCT-116	colon:	n/a	n/a
11	JUN	chr8:125959103-125959525	K562	blood:	n/a	n/a
12	SETDB1	chr8:125958927-125959657	U2OS	brain:	n/a	n/a
13	KAP1	chr8:125959070-125959687	HEK293	kidney:	n/a	n/a
14	CBX3	chr8:125958895-125959610	K562	blood:	n/a	n/a
15	CBX3	chr8:125959063-125959635	HCT-116	colon:	n/a	n/a
16	EP300	chr8:125959208-125959513	K562	blood:	n/a	n/a
17	STAT3	chr8:125959159-125959704	MCF10A-Er-Src	breast:	n/a	n/a
18	SETDB1	chr8:125959044-125960098	K562	blood:	n/a	n/a
19	JUN	chr8:125958981-125959647	K562	blood:	n/a	n/a
20	JUND	chr8:125959011-125959695	SK-N-SH	brain:	n/a	chr8:125959308-125959319
21	JUND	chr8:125959084-125959540	K562	blood:	n/a	chr8:125959308-125959319
22	BACH1	chr8:125959149-125959549	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:125551315..125552840-chr8:125959019..125961791,2	MCF-7	breast:
2	chr8:125952528..125955294-chr8:125957402..125959514,3	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs13281583	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1834716	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2590668	0.83[CHB][hapmap]
rs2590669	0.91[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs2725878	0.93[YRI][hapmap]
rs2725879	0.91[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs2725881	0.91[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs28532503	0.81[EUR][1000 genomes]
rs4634661	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891434	chr8:125630655-126324432	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
2	nsv1030803	chr8:125868684-125969635	Weak transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
3	nsv1024405	chr8:125868684-125971035	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
4	nsv1020502	chr8:125868684-125972572	Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:125958600-125959800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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