Variant report

Variant	rs13283836
Chromosome Location	chr9:96708651-96708652
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1057713	0.96[CEU][hapmap];0.81[CHB][hapmap];0.82[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10821273	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10821274	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11788035	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11789015	0.92[YRI][hapmap];0.86[AFR][1000 genomes]
rs11792744	0.80[YRI][hapmap]
rs11999521	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11999551	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12005806	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1320546	0.96[CEU][hapmap];0.81[CHB][hapmap];0.82[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13291289	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1933680	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1933681	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1933682	0.82[AMR][1000 genomes]
rs2095778	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35001304	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4437716	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4563951	0.96[CEU][hapmap];0.82[CHB][hapmap];0.82[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56285369	0.80[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs7034685	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7858520	0.87[AFR][1000 genomes]
rs7872123	0.96[CEU][hapmap];0.81[CHB][hapmap];0.82[YRI][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893589	chr9:96624645-96884544	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1035418	chr9:96647940-96711409	Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Active TSS Strong transcription	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv824993	chr9:96699362-96725105	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv893590	chr9:96701287-96729129	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96707400-96708800	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr9:96707600-96708800	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
3	chr9:96707600-96708800	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr9:96707800-96708800	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
5	chr9:96707800-96708800	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
6	chr9:96707800-96708800	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
7	chr9:96707800-96708800	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
8	chr9:96707800-96708800	Bivalent Enhancer	Liver	Liver
9	chr9:96707800-96708800	Bivalent/Poised TSS	Brain Anterior Caudate	brain
10	chr9:96707800-96708800	Flanking Bivalent TSS/Enh	Colonic Mucosa	Colon
11	chr9:96707800-96708800	Flanking Bivalent TSS/Enh	Duodenum Mucosa	Duodenum
12	chr9:96707800-96708800	Bivalent/Poised TSS	A549	lung
13	chr9:96707800-96709000	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
14	chr9:96707800-96709000	Active TSS	Right Atrium	heart
15	chr9:96708000-96708800	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
16	chr9:96708000-96708800	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
17	chr9:96708000-96708800	Flanking Bivalent TSS/Enh	Primary neutrophils fromperipheralblood	blood
18	chr9:96708000-96708800	Bivalent Enhancer	Primary T helper 17 cells PMA-I stimulated	--
19	chr9:96708000-96708800	Bivalent Enhancer	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr9:96708000-96708800	Bivalent Enhancer	Fetal Heart	heart
21	chr9:96708000-96709000	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
22	chr9:96708200-96708800	Bivalent Enhancer	Primary mononuclear cells fromperipheralblood	Blood
23	chr9:96708200-96709000	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
24	chr9:96708200-96709000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
25	chr9:96708200-96709000	Bivalent Enhancer	Lung	lung
26	chr9:96708400-96708800	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr9:96708400-96708800	Bivalent Enhancer	Primary B cells from cord blood	blood
28	chr9:96708400-96708800	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
29	chr9:96708400-96708800	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr9:96708400-96708800	Bivalent Enhancer	Brain Cingulate Gyrus	brain
31	chr9:96708400-96708800	Flanking Bivalent TSS/Enh	Brain Substantia Nigra	brain
32	chr9:96708400-96708800	Bivalent Enhancer	Colon Smooth Muscle	Colon
33	chr9:96708400-96708800	Bivalent Enhancer	Placenta	Placenta
34	chr9:96708400-96708800	Bivalent Enhancer	Psoas Muscle	Psoas
35	chr9:96708400-96708800	Flanking Bivalent TSS/Enh	Skeletal Muscle Female	skeletal muscle
36	chr9:96708400-96709000	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr9:96708400-96709000	Bivalent Enhancer	Primary B cells from peripheral blood	blood
38	chr9:96708400-96709000	Bivalent Enhancer	Fetal Muscle Leg	muscle
39	chr9:96708400-96709000	Bivalent Enhancer	Stomach Mucosa	stomach
40	chr9:96708400-96709200	Enhancers	Pancreas	Pancrea
41	chr9:96708600-96708800	Flanking Bivalent TSS/Enh	ES-I3 Cell Line	embryonic stem cell
42	chr9:96708600-96708800	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
43	chr9:96708600-96708800	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell
44	chr9:96708600-96708800	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
45	chr9:96708600-96708800	Bivalent Enhancer	Primary hematopoietic stem cells	blood
46	chr9:96708600-96708800	Bivalent Enhancer	Primary T killer naive cells fromperipheralblood	blood
47	chr9:96708600-96708800	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr9:96708600-96708800	Bivalent Enhancer	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr9:96708600-96708800	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr9:96708600-96708800	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin

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