Variant report

Variant	rs4437716
Chromosome Location	chr9:96710494-96710495
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:96710465..96712948-chr9:96713592..96715312,2	MCF-7	breast:
2	chr9:96710015..96712729-chr9:96712737..96714256,2	MCF-7	breast:
3	chr9:96709646..96715968-chr9:96715980..96721050,10	MCF-7	breast:
4	chr9:96705963..96707541-chr9:96709329..96711419,2	MCF-7	breast:
5	chr9:96699994..96702903-chr9:96710019..96711705,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000235601	Chromatin interaction
ENSG00000131668	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1057713	0.96[CEU][hapmap];0.83[CHB][hapmap];0.82[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10821273	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10821274	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11788035	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11792744	0.91[YRI][hapmap]
rs11999521	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11999551	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12005806	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1320546	0.96[CEU][hapmap];0.83[CHB][hapmap];0.82[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13283836	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13291289	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1933680	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1933681	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1933682	0.84[AMR][1000 genomes]
rs2095778	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35001304	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4563951	0.96[CEU][hapmap];0.84[CHB][hapmap];0.83[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs56285369	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs62574346	0.82[AFR][1000 genomes]
rs7034685	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7872123	0.96[CEU][hapmap];0.83[CHB][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893589	chr9:96624645-96884544	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1035418	chr9:96647940-96711409	Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Active TSS Strong transcription	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv824993	chr9:96699362-96725105	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv893590	chr9:96701287-96729129	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96708600-96710600	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
2	chr9:96708600-96713000	Weak transcription	Gastric	stomach
3	chr9:96709000-96713200	Weak transcription	Right Atrium	heart
4	chr9:96709200-96710800	Weak transcription	Pancreas	Pancrea
5	chr9:96710000-96710600	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
6	chr9:96710000-96711000	Bivalent Enhancer	Fetal Stomach	stomach
7	chr9:96710200-96710800	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr9:96710200-96712400	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
9	chr9:96710400-96710600	Flanking Bivalent TSS/Enh	ES-I3 Cell Line	embryonic stem cell
10	chr9:96710400-96710600	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
11	chr9:96710400-96710600	Bivalent Enhancer	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr9:96710400-96710600	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
13	chr9:96710400-96710600	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
14	chr9:96710400-96710600	Bivalent Enhancer	Skeletal Muscle Female	skeletal muscle
15	chr9:96710400-96710800	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr9:96710400-96710800	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
17	chr9:96710400-96711200	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
18	chr9:96710400-96711200	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
19	chr9:96710400-96711400	Bivalent Enhancer	Primary T helper naive cells fromperipheralblood	blood
20	chr9:96710400-96711400	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr9:96710400-96712000	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr9:96710400-96712200	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
23	chr9:96710400-96712200	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr9:96710400-96712200	Flanking Active TSS	Stomach Smooth Muscle	stomach
25	chr9:96710400-96713000	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood

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