Variant report

Variant	rs1328477
Chromosome Location	chr6:88009045-88009046
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10944310	0.81[CHB][hapmap]
rs11962148	0.81[CHB][hapmap]
rs11965562	0.81[CHB][hapmap]
rs11970696	0.81[CHB][hapmap]
rs13194868	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13214442	0.80[CHB][hapmap]
rs16879893	0.81[CHB][hapmap]
rs2223877	0.81[CHB][hapmap]
rs2240461	1.00[ASW][hapmap];0.87[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.83[MKK][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2246051	0.81[CHB][hapmap]
rs2246057	0.81[CHB][hapmap]
rs2268996	0.81[CHB][hapmap]
rs2300899	0.81[CHB][hapmap]
rs2325046	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2875533	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[MKK][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3778671	0.81[CHB][hapmap]
rs4706290	0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs4707349	0.86[ASW][hapmap];0.87[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap]
rs60992482	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6915077	0.81[CHB][hapmap]
rs6928057	0.81[CHB][hapmap]
rs728582	0.81[CHB][hapmap]
rs7761943	0.81[CHB][hapmap]
rs7773715	0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs9444485	0.84[AMR][1000 genomes]
rs9444499	0.81[CHB][hapmap]
rs9444501	0.81[CHB][hapmap]
rs9444509	0.81[CHB][hapmap]
rs9450624	0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs9450659	0.86[CHB][hapmap];0.94[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.88[ASN][1000 genomes]
rs9450667	0.81[CHB][hapmap]
rs9450677	0.85[CHB][hapmap]
rs9450681	0.81[CHB][hapmap]
rs9450686	0.81[CHB][hapmap]
rs9450693	0.81[CHB][hapmap]
rs9450698	0.81[CHB][hapmap]
rs9450708	0.81[CHB][hapmap]
rs9450709	0.81[CHB][hapmap]
rs9450716	0.81[CHB][hapmap]
rs9450717	0.81[CHB][hapmap]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs1328477	Hs.485895	cis	multi-tissue	Pritchard
rs1328477	C6orf162	cis	parietal	SCAN
rs1328477	SLC35A1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:0 , 50 per page) page:

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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