Variant report

Variant	rs13284780
Chromosome Location	chr9:13921479-13921480
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10810057	1.00[JPT][hapmap]
rs13291088	0.83[AMR][1000 genomes]
rs13292236	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13292371	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13292975	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1373252	1.00[JPT][hapmap]
rs34602246	0.84[EUR][1000 genomes]
rs34660040	0.84[EUR][1000 genomes]
rs35165583	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs35377705	0.83[EUR][1000 genomes]
rs35454000	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35586069	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35606633	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs35727886	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs35907479	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs35911657	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs35960404	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7018869	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs71507395	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022001	chr9:13717736-13983738	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1033764	chr9:13764918-14226168	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv1032113	chr9:13861066-13923136	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1032447	chr9:13861066-13923673	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv613635	chr9:13893246-13961462	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:13916000-13932800	Weak transcription	Psoas Muscle	Psoas
2	chr9:13920400-13921600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr9:13920800-13922400	Weak transcription	Adipose Nuclei	Adipose
4	chr9:13921400-13922400	Weak transcription	Fetal Lung	lung

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links