Variant report

Variant	rs13292975
Chromosome Location	chr9:13898686-13898687
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:13896594..13899401-chr9:13941918..13943557,2	K562	blood:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10961290	0.81[AMR][1000 genomes]
rs10961291	1.00[JPT][hapmap]
rs13284780	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13292236	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13292371	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13300686	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2382423	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs34414566	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35454000	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35586069	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35592667	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35606633	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6474794	1.00[JPT][hapmap]
rs7018869	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7029494	1.00[JPT][hapmap]
rs71507393	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs71507395	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9969684	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022001	chr9:13717736-13983738	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1033764	chr9:13764918-14226168	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv1032113	chr9:13861066-13923136	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1032447	chr9:13861066-13923673	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv613635	chr9:13893246-13961462	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:13880600-13899800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr9:13895400-13899000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr9:13897000-13899000	Enhancers	Fetal Kidney	kidney
4	chr9:13897200-13899000	Weak transcription	Placenta	Placenta
5	chr9:13897600-13898800	Weak transcription	HSMM	muscle
6	chr9:13897600-13899400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr9:13897600-13900000	Enhancers	Fetal Heart	heart
8	chr9:13897800-13898800	Weak transcription	Brain Substantia Nigra	brain
9	chr9:13897800-13898800	Weak transcription	Fetal Lung	lung
10	chr9:13897800-13898800	Weak transcription	NHEK	skin
11	chr9:13897800-13899000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr9:13897800-13899400	Weak transcription	Adipose Nuclei	Adipose
13	chr9:13897800-13899800	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr9:13897800-13899800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr9:13897800-13900000	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr9:13897800-13900000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr9:13897800-13900000	Weak transcription	Aorta	Aorta
18	chr9:13897800-13901600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr9:13898000-13900400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr9:13898400-13902600	Enhancers	Breast Myoepithelial Primary Cells	Breast
21	chr9:13898600-13899000	Enhancers	Left Ventricle	heart
22	chr9:13898600-13899400	Enhancers	HUVEC	blood vessel
23	chr9:13898600-13900600	Enhancers	Cortex derived primary cultured neurospheres	brain
24	chr9:13898600-13900800	Enhancers	Fetal Muscle Leg	muscle
25	chr9:13898600-13900800	Enhancers	Fetal Stomach	stomach
26	chr9:13898600-13901400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
27	chr9:13898600-13901600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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