Variant report
| Variant | rs10961290 |
|---|---|
| Chromosome Location | chr9:13876220-13876221 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs10810046 | 1.00[ASN][1000 genomes] |
| rs10810054 | 0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10961291 | 1.00[JPT][hapmap] |
| rs12342957 | 1.00[ASN][1000 genomes] |
| rs12345314 | 0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12347936 | 1.00[ASN][1000 genomes] |
| rs13292975 | 0.81[AMR][1000 genomes] |
| rs13300686 | 0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2093428 | 0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2382423 | 0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs34328168 | 0.91[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs34414566 | 0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs35454000 | 0.81[AMR][1000 genomes] |
| rs35592667 | 0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs35606633 | 0.86[AMR][1000 genomes] |
| rs6474794 | 1.00[CHD][hapmap];1.00[JPT][hapmap] |
| rs7018869 | 0.82[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs7029494 | 1.00[JPT][hapmap] |
| rs71507391 | 1.00[ASN][1000 genomes] |
| rs71507392 | 1.00[ASN][1000 genomes] |
| rs71507393 | 0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7858214 | 1.00[ASN][1000 genomes] |
| rs9969684 | 0.93[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs9969743 | 0.81[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1022001 | chr9:13717736-13983738 | Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv1033764 | chr9:13764918-14226168 | Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 8 gene(s) | inside rSNPs | diseases |
| 3 | nsv1032113 | chr9:13861066-13923136 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 4 | nsv1032447 | chr9:13861066-13923673 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr9:13863400-13884200 | Weak transcription | Left Ventricle | heart |
| 2 | chr9:13875800-13877000 | Enhancers | Fetal Muscle Leg | muscle |
