Variant report

Variant	rs12345314
Chromosome Location	chr9:13867021-13867022
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10810046	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10810048	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10810054	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10961288	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10961290	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12342957	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12347936	1.00[ASN][1000 genomes]
rs13300686	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16931096	0.81[AFR][1000 genomes]
rs2093428	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2382423	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34328168	1.00[ASN][1000 genomes]
rs34414566	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35592667	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35606633	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs57774280	0.85[AFR][1000 genomes]
rs58928986	0.83[AFR][1000 genomes]
rs59195451	0.83[AFR][1000 genomes]
rs59472030	0.85[AFR][1000 genomes]
rs59608060	0.83[AFR][1000 genomes]
rs60104828	0.87[AFR][1000 genomes]
rs60542509	0.89[AFR][1000 genomes]
rs61333038	0.87[AFR][1000 genomes]
rs7018527	0.87[AFR][1000 genomes]
rs7018869	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7024733	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7035354	0.85[AFR][1000 genomes]
rs7039583	0.91[AFR][1000 genomes]
rs71507391	1.00[ASN][1000 genomes]
rs71507392	1.00[ASN][1000 genomes]
rs71507393	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7855374	0.83[AFR][1000 genomes]
rs7858214	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7871172	0.83[AFR][1000 genomes]
rs9969684	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022001	chr9:13717736-13983738	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1033764	chr9:13764918-14226168	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv1032113	chr9:13861066-13923136	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1032447	chr9:13861066-13923673	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	esv2269965	chr9:13867021-13867022	Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:13852000-13871000	Weak transcription	Right Ventricle	heart
2	chr9:13863400-13884200	Weak transcription	Left Ventricle	heart

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