Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs12345314	0.87[AFR][1000 genomes]
rs16931031	1.00[EUR][1000 genomes]
rs16931032	1.00[EUR][1000 genomes]
rs16931048	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16931096	0.85[AFR][1000 genomes]
rs55856986	1.00[EUR][1000 genomes]
rs57635010	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57774280	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58928986	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59195451	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59472030	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59608060	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59642352	1.00[EUR][1000 genomes]
rs60542509	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61333038	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61621314	1.00[EUR][1000 genomes]
rs7018527	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7035354	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7039583	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7847104	1.00[EUR][1000 genomes]
rs7853041	1.00[EUR][1000 genomes]
rs7855374	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7871172	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022001	chr9:13717736-13983738	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1033764	chr9:13764918-14226168	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv1032113	chr9:13861066-13923136	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1032447	chr9:13861066-13923673	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:13852000-13871000	Weak transcription	Right Ventricle	heart
2	chr9:13860800-13864600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr9:13862200-13865000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr9:13862400-13865000	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr9:13862600-13865200	Enhancers	Fetal Stomach	stomach
6	chr9:13863000-13864800	Enhancers	Fetal Lung	lung
7	chr9:13863400-13884200	Weak transcription	Left Ventricle	heart
8	chr9:13864000-13864800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr9:13864000-13865400	Enhancers	Fetal Muscle Leg	muscle
10	chr9:13864400-13864600	Enhancers	HUES64 Cell Line	embryonic stem cell

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