Variant report

Variant	rs59642352
Chromosome Location	chr9:13862612-13862613
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10810052	0.81[AFR][1000 genomes]
rs10961289	0.81[AFR][1000 genomes]
rs16931031	1.00[EUR][1000 genomes]
rs16931032	1.00[EUR][1000 genomes]
rs16931048	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs55856986	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57635010	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57774280	1.00[EUR][1000 genomes]
rs58928986	1.00[EUR][1000 genomes]
rs59195451	1.00[EUR][1000 genomes]
rs59472030	1.00[EUR][1000 genomes]
rs59608060	1.00[EUR][1000 genomes]
rs60104828	1.00[EUR][1000 genomes]
rs60542509	1.00[EUR][1000 genomes]
rs61333038	1.00[EUR][1000 genomes]
rs61621314	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7018527	1.00[EUR][1000 genomes]
rs7035354	1.00[EUR][1000 genomes]
rs7039583	1.00[EUR][1000 genomes]
rs7847104	1.00[EUR][1000 genomes]
rs7853041	1.00[EUR][1000 genomes]
rs7855374	1.00[EUR][1000 genomes]
rs7871172	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022001	chr9:13717736-13983738	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1033764	chr9:13764918-14226168	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv1032113	chr9:13861066-13923136	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1032447	chr9:13861066-13923673	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:13852000-13871000	Weak transcription	Right Ventricle	heart
2	chr9:13857600-13863000	Weak transcription	HSMM	muscle
3	chr9:13860200-13864400	Enhancers	Adipose Nuclei	Adipose
4	chr9:13860400-13863200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr9:13860600-13864000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr9:13860800-13864600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr9:13861000-13863600	Enhancers	Fetal Muscle Leg	muscle
8	chr9:13861600-13863200	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr9:13861800-13862800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr9:13861800-13862800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr9:13862000-13863000	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr9:13862000-13864400	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr9:13862200-13865000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr9:13862400-13862800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
15	chr9:13862400-13863400	Enhancers	Skeletal Muscle Male	skeletal muscle
16	chr9:13862400-13863600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr9:13862400-13865000	Enhancers	Cortex derived primary cultured neurospheres	brain
18	chr9:13862600-13862800	Enhancers	Duodenum Smooth Muscle	Duodenum
19	chr9:13862600-13862800	Enhancers	Fetal Heart	heart
20	chr9:13862600-13862800	Enhancers	Fetal Lung	lung
21	chr9:13862600-13863000	Enhancers	HUES48 Cell Line	embryonic stem cell
22	chr9:13862600-13863000	Enhancers	Aorta	Aorta
23	chr9:13862600-13863000	Enhancers	Colon Smooth Muscle	Colon
24	chr9:13862600-13863000	Enhancers	Psoas Muscle	Psoas
25	chr9:13862600-13863000	Enhancers	Skeletal Muscle Female	skeletal muscle
26	chr9:13862600-13863200	Enhancers	ES-I3 Cell Line	embryonic stem cell
27	chr9:13862600-13863200	Enhancers	Placenta	Placenta
28	chr9:13862600-13863200	Enhancers	Stomach Smooth Muscle	stomach
29	chr9:13862600-13863400	Enhancers	Brain Cingulate Gyrus	brain
30	chr9:13862600-13863400	Enhancers	Left Ventricle	heart
31	chr9:13862600-13863400	Enhancers	Ovary	ovary
32	chr9:13862600-13863600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr9:13862600-13863800	Enhancers	Brain Substantia Nigra	brain
34	chr9:13862600-13864200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr9:13862600-13864200	Enhancers	Breast Myoepithelial Primary Cells	Breast
36	chr9:13862600-13865200	Enhancers	Fetal Stomach	stomach

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