Variant report
| Variant | rs7018527 |
|---|---|
| Chromosome Location | chr9:13887136-13887137 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs12345314 | 0.87[AFR][1000 genomes] |
| rs16931031 | 1.00[EUR][1000 genomes] |
| rs16931032 | 1.00[EUR][1000 genomes] |
| rs16931048 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs16931096 | 0.93[AFR][1000 genomes] |
| rs55856986 | 1.00[EUR][1000 genomes] |
| rs57635010 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs57774280 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs58928986 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs59195451 | 0.95[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs59472030 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs59608060 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs59642352 | 1.00[EUR][1000 genomes] |
| rs60104828 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs60542509 | 0.98[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs61333038 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs61621314 | 1.00[EUR][1000 genomes] |
| rs7035354 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7039583 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7847104 | 1.00[EUR][1000 genomes] |
| rs7853041 | 1.00[EUR][1000 genomes] |
| rs7855374 | 0.95[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7871172 | 0.95[AFR][1000 genomes];1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1022001 | chr9:13717736-13983738 | Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv1033764 | chr9:13764918-14226168 | Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 8 gene(s) | inside rSNPs | diseases |
| 3 | nsv1032113 | chr9:13861066-13923136 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 4 | nsv1032447 | chr9:13861066-13923673 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr9:13880600-13899800 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
