Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12345314	0.81[AFR][1000 genomes]
rs16931065	0.83[EUR][1000 genomes]
rs55654911	0.92[EUR][1000 genomes]
rs57652940	0.83[EUR][1000 genomes]
rs57774280	0.95[AFR][1000 genomes]
rs58928986	0.80[AFR][1000 genomes]
rs59195451	0.93[AFR][1000 genomes]
rs59472030	0.95[AFR][1000 genomes]
rs59608060	0.93[AFR][1000 genomes]
rs60104828	0.85[AFR][1000 genomes]
rs60162449	0.94[EUR][1000 genomes]
rs60542509	0.91[AFR][1000 genomes]
rs61333038	0.85[AFR][1000 genomes]
rs62533706	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7018527	0.93[AFR][1000 genomes]
rs7035354	0.95[AFR][1000 genomes]
rs7039583	0.89[AFR][1000 genomes]
rs73648422	0.97[EUR][1000 genomes]
rs7855374	0.93[AFR][1000 genomes]
rs7871172	0.93[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022001	chr9:13717736-13983738	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1033764	chr9:13764918-14226168	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv1032113	chr9:13861066-13923136	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1032447	chr9:13861066-13923673	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv613635	chr9:13893246-13961462	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:13901400-13904200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr9:13901800-13904200	Weak transcription	NHEK	skin
3	chr9:13902000-13914200	Weak transcription	Psoas Muscle	Psoas

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