Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:13853291..13855822-chr9:13857437..13860542,3	K562	blood:

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs16931031	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16931048	1.00[EUR][1000 genomes]
rs16931061	1.00[MEX][hapmap]
rs55856986	1.00[EUR][1000 genomes]
rs57635010	1.00[EUR][1000 genomes]
rs57774280	1.00[EUR][1000 genomes]
rs58928986	1.00[EUR][1000 genomes]
rs59195451	1.00[EUR][1000 genomes]
rs59472030	1.00[EUR][1000 genomes]
rs59608060	1.00[EUR][1000 genomes]
rs59642352	1.00[EUR][1000 genomes]
rs60104828	1.00[EUR][1000 genomes]
rs60542509	1.00[EUR][1000 genomes]
rs61333038	1.00[EUR][1000 genomes]
rs61621314	1.00[EUR][1000 genomes]
rs7018527	1.00[EUR][1000 genomes]
rs7035354	1.00[EUR][1000 genomes]
rs7039583	1.00[EUR][1000 genomes]
rs7847104	1.00[EUR][1000 genomes]
rs7853041	1.00[EUR][1000 genomes]
rs7855374	1.00[EUR][1000 genomes]
rs7871172	1.00[EUR][1000 genomes]
rs953747	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022001	chr9:13717736-13983738	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1033764	chr9:13764918-14226168	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv892592	chr9:13787648-13859052	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:13852000-13871000	Weak transcription	Right Ventricle	heart
2	chr9:13856400-13862600	Weak transcription	Left Ventricle	heart
3	chr9:13856800-13860200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr9:13857000-13857600	Enhancers	HSMM	muscle
5	chr9:13857000-13858200	Enhancers	NHLF	lung
6	chr9:13857200-13858200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr9:13857200-13858200	Enhancers	NHDF-Ad	bronchial
8	chr9:13857200-13858200	Enhancers	NHEK	skin
9	chr9:13857200-13860000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr9:13857400-13857600	Flanking Active TSS	Adipose Nuclei	Adipose
11	chr9:13857400-13857800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr9:13857400-13858200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr9:13857400-13858200	Enhancers	Osteobl	bone
14	chr9:13857400-13858400	Enhancers	Muscle Satellite Cultured Cells	--
15	chr9:13857400-13858800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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