Variant report

Variant	rs34328168
Chromosome Location	chr9:13879957-13879958
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10810046	1.00[ASN][1000 genomes]
rs10810054	1.00[ASN][1000 genomes]
rs10961290	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12342957	1.00[ASN][1000 genomes]
rs12345314	1.00[ASN][1000 genomes]
rs12347936	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13291433	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13300686	1.00[ASN][1000 genomes]
rs2093428	1.00[ASN][1000 genomes]
rs2382423	1.00[ASN][1000 genomes]
rs34414566	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs35592667	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs35606633	0.80[AMR][1000 genomes]
rs71507391	1.00[ASN][1000 genomes]
rs71507392	1.00[ASN][1000 genomes]
rs71507393	1.00[ASN][1000 genomes]
rs7858214	1.00[ASN][1000 genomes]
rs9969743	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022001	chr9:13717736-13983738	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1033764	chr9:13764918-14226168	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv1032113	chr9:13861066-13923136	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1032447	chr9:13861066-13923673	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:13863400-13884200	Weak transcription	Left Ventricle	heart
2	chr9:13879800-13880400	Enhancers	NH-A	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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