Variant report
| Variant | rs10961288 |
|---|---|
| Chromosome Location | chr9:13866972-13866973 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs10810048 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10810049 | 0.96[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10810053 | 0.85[AFR][1000 genomes] |
| rs10810054 | 0.85[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs10961287 | 0.85[AFR][1000 genomes] |
| rs10961291 | 1.00[JPT][hapmap] |
| rs12345314 | 0.89[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs13300686 | 0.85[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs1373252 | 1.00[CHB][hapmap] |
| rs1410021 | 0.97[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1410022 | 0.97[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs16931061 | 1.00[CHB][hapmap] |
| rs2093428 | 0.83[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs2224553 | 0.85[AFR][1000 genomes] |
| rs2382423 | 0.81[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs6474794 | 1.00[JPT][hapmap] |
| rs7024733 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7029494 | 1.00[JPT][hapmap] |
| rs7035382 | 0.87[ASN][1000 genomes] |
| rs7858214 | 0.81[AMR][1000 genomes] |
| rs953747 | 1.00[CHB][hapmap] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1022001 | chr9:13717736-13983738 | Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv1033764 | chr9:13764918-14226168 | Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 8 gene(s) | inside rSNPs | diseases |
| 3 | nsv1032113 | chr9:13861066-13923136 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 4 | nsv1032447 | chr9:13861066-13923673 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr9:13852000-13871000 | Weak transcription | Right Ventricle | heart |
| 2 | chr9:13863400-13884200 | Weak transcription | Left Ventricle | heart |
