Variant report

Variant	rs10810053
Chromosome Location	chr9:13871899-13871900
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10810045	0.90[ASN][1000 genomes]
rs10810048	0.84[AFR][1000 genomes]
rs10810049	0.85[AFR][1000 genomes]
rs10810050	0.90[ASN][1000 genomes]
rs10810052	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10810055	0.90[ASN][1000 genomes]
rs10961287	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10961288	0.85[AFR][1000 genomes]
rs10961289	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10961291	0.90[CEU][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.91[TSI][hapmap];0.88[EUR][1000 genomes]
rs12002277	0.90[ASN][1000 genomes]
rs12006148	0.90[ASN][1000 genomes]
rs12344958	0.90[ASN][1000 genomes]
rs12347773	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1373252	1.00[CHB][hapmap]
rs1410019	0.90[ASN][1000 genomes]
rs1410021	0.84[AFR][1000 genomes]
rs1410022	0.85[AFR][1000 genomes]
rs1410023	0.90[ASN][1000 genomes]
rs16931061	1.00[CHB][hapmap]
rs2224553	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34857250	0.88[EUR][1000 genomes]
rs4548276	0.90[ASN][1000 genomes]
rs6474794	0.94[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.86[TSI][hapmap];0.83[EUR][1000 genomes]
rs7021523	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7024733	0.85[AFR][1000 genomes]
rs7029494	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs7038661	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7874643	0.90[ASN][1000 genomes]
rs7874825	0.90[ASN][1000 genomes]
rs953747	1.00[CHB][hapmap]
rs9886719	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022001	chr9:13717736-13983738	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1033764	chr9:13764918-14226168	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv1032113	chr9:13861066-13923136	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1032447	chr9:13861066-13923673	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:13863400-13884200	Weak transcription	Left Ventricle	heart

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