Variant report

Variant	rs1410019
Chromosome Location	chr9:13861802-13861803
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10118592	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs10810045	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10810050	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10810053	0.90[ASN][1000 genomes]
rs10810055	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10810057	1.00[CHB][hapmap]
rs10961287	0.90[ASN][1000 genomes]
rs10961291	1.00[JPT][hapmap]
rs10961296	0.81[AFR][1000 genomes]
rs10961303	0.85[YRI][hapmap]
rs12002277	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12006148	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12344771	0.85[AFR][1000 genomes]
rs12344958	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12347773	0.90[ASN][1000 genomes]
rs12350449	0.82[AFR][1000 genomes]
rs1410023	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17822351	0.81[AFR][1000 genomes]
rs1822541	0.83[YRI][hapmap]
rs2224553	0.90[ASN][1000 genomes]
rs34187448	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4548276	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6474794	1.00[JPT][hapmap]
rs7021523	0.90[ASN][1000 genomes]
rs7023760	0.90[ASN][1000 genomes]
rs7023898	0.90[ASN][1000 genomes]
rs7029494	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7031343	0.84[AFR][1000 genomes]
rs7035288	0.82[AFR][1000 genomes]
rs7851375	0.83[AFR][1000 genomes]
rs7874643	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7874825	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9886719	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022001	chr9:13717736-13983738	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1033764	chr9:13764918-14226168	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv1032113	chr9:13861066-13923136	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1032447	chr9:13861066-13923673	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:13852000-13871000	Weak transcription	Right Ventricle	heart
2	chr9:13856400-13862600	Weak transcription	Left Ventricle	heart
3	chr9:13857600-13863000	Weak transcription	HSMM	muscle
4	chr9:13857800-13862000	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr9:13858200-13862600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr9:13858800-13862200	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr9:13859400-13862600	Weak transcription	Fetal Heart	heart
8	chr9:13860000-13862000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr9:13860000-13862200	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr9:13860200-13862000	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr9:13860200-13862400	Enhancers	Fetal Lung	lung
12	chr9:13860200-13864400	Enhancers	Adipose Nuclei	Adipose
13	chr9:13860400-13863200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr9:13860600-13864000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr9:13860800-13864600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr9:13861000-13862000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
17	chr9:13861000-13863600	Enhancers	Fetal Muscle Leg	muscle
18	chr9:13861400-13862000	Enhancers	H1 Cell Line	embryonic stem cell
19	chr9:13861400-13862400	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr9:13861400-13862600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr9:13861400-13862600	Weak transcription	Psoas Muscle	Psoas
22	chr9:13861600-13862600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr9:13861600-13862600	Weak transcription	Fetal Stomach	stomach
24	chr9:13861600-13863200	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr9:13861800-13862200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr9:13861800-13862800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr9:13861800-13862800	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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