Variant report

Variant	rs12002277
Chromosome Location	chr9:13871121-13871122
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10118592	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10810045	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10810050	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10810053	0.90[ASN][1000 genomes]
rs10810055	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10961287	0.90[ASN][1000 genomes]
rs10961291	1.00[JPT][hapmap]
rs10961296	0.82[AFR][1000 genomes]
rs10961303	0.83[YRI][hapmap]
rs12006148	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12344771	0.92[AFR][1000 genomes]
rs12344958	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12347773	0.90[ASN][1000 genomes]
rs12350449	0.88[AFR][1000 genomes]
rs1359846	0.80[AFR][1000 genomes]
rs1410019	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1410023	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17822351	0.82[AFR][1000 genomes]
rs1822541	0.84[YRI][hapmap]
rs2224553	0.90[ASN][1000 genomes]
rs34187448	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4548276	0.89[AFR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6474794	1.00[JPT][hapmap]
rs7021523	0.90[ASN][1000 genomes]
rs7023760	0.90[ASN][1000 genomes]
rs7023898	0.90[ASN][1000 genomes]
rs7024597	0.84[AFR][1000 genomes]
rs7029494	0.91[CEU][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7031343	0.90[AFR][1000 genomes]
rs7035288	0.85[AFR][1000 genomes]
rs7036035	0.81[AFR][1000 genomes]
rs7851375	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs7874643	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7874825	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs981564	0.86[AFR][1000 genomes]
rs9886719	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022001	chr9:13717736-13983738	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1033764	chr9:13764918-14226168	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv1032113	chr9:13861066-13923136	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1032447	chr9:13861066-13923673	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:13863400-13884200	Weak transcription	Left Ventricle	heart

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