Variant report

Variant	rs10961296
Chromosome Location	chr9:13904860-13904861
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10118592	0.88[AFR][1000 genomes]
rs10756517	0.86[EUR][1000 genomes]
rs10810057	0.86[MEX][hapmap]
rs10961297	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10961300	0.90[EUR][1000 genomes]
rs10961303	0.87[YRI][hapmap]
rs12002277	0.82[AFR][1000 genomes]
rs12343481	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12344771	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12350449	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13302215	0.82[EUR][1000 genomes]
rs1359846	0.84[AFR][1000 genomes]
rs1373252	0.83[EUR][1000 genomes]
rs1410019	0.81[AFR][1000 genomes]
rs17822351	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1822541	0.85[CEU][hapmap];0.83[YRI][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1822542	0.80[EUR][1000 genomes]
rs1969938	0.83[EUR][1000 genomes]
rs1969940	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2197298	0.85[EUR][1000 genomes]
rs4548276	0.80[AFR][1000 genomes]
rs7019911	0.83[EUR][1000 genomes]
rs7023898	0.80[AMR][1000 genomes]
rs7024597	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7027511	0.81[AFR][1000 genomes]
rs7029494	0.87[YRI][hapmap]
rs7031343	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs7035288	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7036035	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs7847329	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7850903	0.90[EUR][1000 genomes]
rs7851314	0.88[EUR][1000 genomes]
rs7851375	0.91[AFR][1000 genomes]
rs7854416	0.90[EUR][1000 genomes]
rs7854918	0.90[EUR][1000 genomes]
rs7864043	0.83[EUR][1000 genomes]
rs7874643	0.81[AFR][1000 genomes]
rs981564	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022001	chr9:13717736-13983738	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1033764	chr9:13764918-14226168	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv1032113	chr9:13861066-13923136	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1032447	chr9:13861066-13923673	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv613635	chr9:13893246-13961462	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:13902000-13914200	Weak transcription	Psoas Muscle	Psoas
2	chr9:13904400-13905200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr9:13904400-13905400	Enhancers	Muscle Satellite Cultured Cells	--

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