Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10756517	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10810057	1.00[CEU][hapmap];0.91[MEX][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10961296	0.83[EUR][1000 genomes]
rs10961300	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11999174	0.82[EUR][1000 genomes]
rs12343481	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12344771	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1373252	0.86[EUR][1000 genomes]
rs17822351	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1822541	0.85[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.82[YRI][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1822542	0.83[EUR][1000 genomes]
rs1969940	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2197298	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7019911	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7036035	0.83[AMR][1000 genomes]
rs7847329	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7850903	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7851314	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7854416	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7854918	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7864043	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022001	chr9:13717736-13983738	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1033764	chr9:13764918-14226168	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv1032113	chr9:13861066-13923136	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1032447	chr9:13861066-13923673	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv613635	chr9:13893246-13961462	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:13912600-13919200	Weak transcription	Right Atrium	heart
2	chr9:13916000-13932800	Weak transcription	Psoas Muscle	Psoas
3	chr9:13916200-13919200	Weak transcription	Aorta	Aorta
4	chr9:13916400-13920400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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