Variant report

Variant	rs13302215
Chromosome Location	chr9:13924854-13924855
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10756517	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10961296	0.82[EUR][1000 genomes]
rs10961300	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11999174	0.80[EUR][1000 genomes]
rs1373252	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17822351	0.82[EUR][1000 genomes]
rs1822541	0.87[EUR][1000 genomes]
rs1822542	0.81[EUR][1000 genomes]
rs1969940	0.80[EUR][1000 genomes]
rs2197298	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7019911	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7847329	0.85[EUR][1000 genomes]
rs7850903	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7851314	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7854416	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7854918	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7864043	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022001	chr9:13717736-13983738	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1033764	chr9:13764918-14226168	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv613635	chr9:13893246-13961462	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:13916000-13932800	Weak transcription	Psoas Muscle	Psoas
2	chr9:13924200-13938000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr9:13924800-13932400	Weak transcription	Fetal Muscle Leg	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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