Variant report

Variant	rs13285566
Chromosome Location	chr9:116656891-116656892
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:116646875..116648499-chr9:116655212..116658184,3	MCF-7	breast:
2	chr9:116647094..116648726-chr9:116655272..116657575,2	K562	blood:
3	chr9:116651215..116653821-chr9:116654616..116657370,3	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12551599	0.93[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs13301669	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17200294	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17200714	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34488026	0.90[EUR][1000 genomes]
rs34727401	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4979289	1.00[CEU][hapmap]
rs4979290	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4979306	0.81[EUR][1000 genomes]
rs7040810	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7041034	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430093	chr9:116330446-117325446	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116639200-116663400	Weak transcription	Gastric	stomach
2	chr9:116649200-116658000	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr9:116649600-116660000	Weak transcription	Small Intestine	intestine
4	chr9:116649800-116663800	Weak transcription	HSMMtube	muscle
5	chr9:116649800-116668600	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr9:116650200-116657600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr9:116650200-116657800	Weak transcription	HUVEC	blood vessel
8	chr9:116650600-116662800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr9:116651000-116662600	Weak transcription	Fetal Intestine Small	intestine
10	chr9:116651000-116662800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr9:116651000-116668000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr9:116651200-116663200	Weak transcription	Fetal Stomach	stomach
13	chr9:116651200-116675000	Weak transcription	Colon Smooth Muscle	Colon
14	chr9:116652200-116668400	Weak transcription	NH-A	brain
15	chr9:116653000-116657800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr9:116653000-116657800	Weak transcription	K562	blood
17	chr9:116653000-116663800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr9:116653200-116657200	Weak transcription	Fetal Kidney	kidney
19	chr9:116653200-116658400	Weak transcription	Fetal Muscle Leg	muscle
20	chr9:116653200-116660400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr9:116653200-116668400	Weak transcription	NHLF	lung
22	chr9:116653200-116669600	Weak transcription	HUES48 Cell Line	embryonic stem cell
23	chr9:116653200-116671800	Weak transcription	Fetal Lung	lung
24	chr9:116653400-116657800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr9:116653400-116669000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr9:116653800-116657400	Weak transcription	NHDF-Ad	bronchial
27	chr9:116653800-116665400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
28	chr9:116653800-116669000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr9:116653800-116674000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr9:116654000-116657800	Weak transcription	Pancreatic Islets	Pancreatic Islet
31	chr9:116654000-116661400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr9:116654200-116658400	Enhancers	Liver	Liver
33	chr9:116654400-116665400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr9:116654400-116668200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr9:116654600-116663600	Weak transcription	HSMM	muscle
36	chr9:116655400-116660800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr9:116655400-116661200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr9:116655400-116664000	Weak transcription	Primary hematopoietic stem cells	blood
39	chr9:116655600-116659200	Weak transcription	A549	lung
40	chr9:116655600-116661200	Weak transcription	Pancreas	Pancrea
41	chr9:116655600-116663400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr9:116655600-116663400	Weak transcription	Ovary	ovary

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