Variant report

Variant	rs34727401
Chromosome Location	chr9:116669068-116669069
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:116667918..116669920-chr9:116674262..116678050,3	MCF-7	breast:
2	chr9:116666574..116671426-chr9:116673853..116679155,7	K562	blood:
3	chr9:116663867..116665785-chr9:116668142..116670914,2	K562	blood:
4	chr9:116668474..116670101-chr9:116671366..116673510,2	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12551599	0.95[EUR][1000 genomes]
rs13285566	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13301669	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17200294	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17200714	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34075683	0.82[EUR][1000 genomes]
rs34488026	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4979290	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4979306	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7040810	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7041034	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430093	chr9:116330446-117325446	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116651200-116675000	Weak transcription	Colon Smooth Muscle	Colon
2	chr9:116653200-116669600	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr9:116653200-116671800	Weak transcription	Fetal Lung	lung
4	chr9:116653800-116674000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr9:116659400-116685400	Weak transcription	A549	lung
6	chr9:116661800-116669200	Weak transcription	Lung	lung
7	chr9:116662000-116671400	Weak transcription	Right Ventricle	heart
8	chr9:116664000-116669600	Weak transcription	Fetal Intestine Small	intestine
9	chr9:116664000-116674400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr9:116664200-116669400	Weak transcription	Ovary	ovary
11	chr9:116664400-116669200	Weak transcription	Fetal Stomach	stomach
12	chr9:116664400-116669400	Weak transcription	Spleen	Spleen
13	chr9:116664400-116669600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr9:116664400-116669600	Weak transcription	Fetal Muscle Trunk	muscle
15	chr9:116666400-116683800	Weak transcription	Primary hematopoietic stem cells	blood
16	chr9:116666600-116683000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr9:116667200-116674200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr9:116667400-116684400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr9:116667800-116673200	Enhancers	Breast Myoepithelial Primary Cells	Breast
20	chr9:116668000-116669800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr9:116668000-116669800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr9:116668000-116671400	Enhancers	Fetal Thymus	thymus
23	chr9:116668000-116681800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr9:116668200-116669800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr9:116668400-116669200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr9:116668400-116669400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr9:116668400-116669400	Enhancers	NH-A	brain
28	chr9:116668400-116669400	Enhancers	Osteobl	bone
29	chr9:116668400-116669600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr9:116668400-116669600	Enhancers	NHDF-Ad	bronchial
31	chr9:116668400-116669600	Enhancers	NHLF	lung
32	chr9:116668400-116669800	Enhancers	HUVEC	blood vessel
33	chr9:116668400-116670000	Enhancers	Esophagus	oesophagus
34	chr9:116668400-116670200	Enhancers	Skeletal Muscle Female	skeletal muscle
35	chr9:116668400-116670600	Enhancers	H1 Cell Line	embryonic stem cell
36	chr9:116668600-116669400	Enhancers	Fetal Muscle Leg	muscle
37	chr9:116668600-116669600	Enhancers	Muscle Satellite Cultured Cells	--
38	chr9:116668600-116669600	Enhancers	Brain Anterior Caudate	brain
39	chr9:116668600-116669800	Enhancers	HSMM	muscle
40	chr9:116668600-116670000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr9:116668600-116670000	Enhancers	Psoas Muscle	Psoas
42	chr9:116668600-116670000	Weak transcription	Thymus	Thymus
43	chr9:116668600-116670000	Enhancers	HSMMtube	muscle
44	chr9:116668600-116670200	Enhancers	Stomach Mucosa	stomach
45	chr9:116668600-116672600	Enhancers	Pancreas	Pancrea
46	chr9:116668800-116669200	Flanking Active TSS	HMEC	breast
47	chr9:116668800-116678800	Weak transcription	H9 Cell Line	embryonic stem cell
48	chr9:116669000-116669200	Enhancers	NHEK	skin
49	chr9:116669000-116669400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr9:116669000-116669400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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