Variant report

Variant	rs13289265
Chromosome Location	chr9:104045761-104045762
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10116399	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs10118704	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10120191	1.00[ASN][1000 genomes]
rs10122456	1.00[CEU][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];0.81[MKK][hapmap];1.00[ASN][1000 genomes]
rs10124153	1.00[CEU][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10124833	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10217411	0.88[GIH][hapmap]
rs13440036	0.88[GIH][hapmap]
rs13440426	0.88[GIH][hapmap]
rs56065216	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6479047	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6479048	0.88[GIH][hapmap]
rs7036576	1.00[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037157	chr9:104045761-104149233	Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:104038200-104054000	Weak transcription	Fetal Brain Male	brain
2	chr9:104039200-104050000	Weak transcription	HepG2	liver
3	chr9:104041400-104053000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr9:104043400-104053400	Weak transcription	Brain Cingulate Gyrus	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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