Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:104037074..104038611-chr9:104051619..104053776,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10115417	0.90[AFR][1000 genomes]
rs10116399	1.00[ASN][1000 genomes]
rs10118704	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10120191	0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10122456	1.00[ASN][1000 genomes]
rs10124153	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10124833	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10217289	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs10217411	0.91[CEU][hapmap];0.95[EUR][1000 genomes]
rs10217724	0.90[CEU][hapmap]
rs10989463	0.87[AFR][1000 genomes]
rs12337610	0.90[CEU][hapmap];0.88[EUR][1000 genomes]
rs12352498	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13289265	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1341768	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13440036	0.91[CEU][hapmap];0.95[EUR][1000 genomes]
rs13440141	0.90[CEU][hapmap];0.94[EUR][1000 genomes]
rs13440426	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1544193	0.95[EUR][1000 genomes]
rs1544194	0.95[EUR][1000 genomes]
rs28398252	0.95[EUR][1000 genomes]
rs56065216	0.81[EUR][1000 genomes]
rs6479048	0.91[CEU][hapmap];0.88[EUR][1000 genomes]
rs7028337	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7037136	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037157	chr9:104045761-104149233	Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1049740	chr9:104049624-104075825	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:104038200-104054000	Weak transcription	Fetal Brain Male	brain
2	chr9:104041400-104053000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr9:104043400-104053400	Weak transcription	Brain Cingulate Gyrus	brain
4	chr9:104046000-104056400	Weak transcription	Brain Anterior Caudate	brain
5	chr9:104046000-104061800	Weak transcription	Brain Substantia Nigra	brain
6	chr9:104048800-104071600	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr9:104050800-104053600	Weak transcription	Brain Angular Gyrus	brain
8	chr9:104051400-104067800	Weak transcription	HepG2	liver
9	chr9:104051600-104054600	Weak transcription	Fetal Brain Female	brain
10	chr9:104052600-104054800	Weak transcription	Brain Hippocampus Middle	brain
11	chr9:104052800-104053400	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell

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