Variant report

Variant	rs12337610
Chromosome Location	chr9:104069536-104069537
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:104068294..104070576-chr9:104071673..104073236,2	MCF-7	breast:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10217289	1.00[CEU][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10217411	0.89[CEU][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10217724	1.00[CEU][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12338304	0.99[AFR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12352498	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1341768	0.90[CEU][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13440036	1.00[CEU][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13440141	1.00[CEU][hapmap];0.91[YRI][hapmap];0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13440426	0.89[CEU][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1544193	0.99[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1544194	0.99[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2000165	0.82[EUR][1000 genomes]
rs28398252	0.99[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28489693	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55805275	1.00[ASN][1000 genomes]
rs56198539	1.00[ASN][1000 genomes]
rs6479047	0.90[CEU][hapmap];0.88[EUR][1000 genomes]
rs6479048	1.00[CEU][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7028337	0.89[CEU][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7855910	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037157	chr9:104045761-104149233	Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1049740	chr9:104049624-104075825	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:104048800-104071600	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr9:104068200-104071800	Weak transcription	HepG2	liver
3	chr9:104068400-104069800	Enhancers	Fetal Muscle Leg	muscle
4	chr9:104068400-104070800	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr9:104069000-104069800	Enhancers	Adipose Nuclei	Adipose
6	chr9:104069000-104070800	Enhancers	HMEC	breast
7	chr9:104069200-104069600	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr9:104069200-104069800	Enhancers	Brain Anterior Caudate	brain
9	chr9:104069200-104069800	Enhancers	Brain Germinal Matrix	brain
10	chr9:104069200-104069800	Enhancers	Esophagus	oesophagus
11	chr9:104069200-104070000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
12	chr9:104069200-104070800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr9:104069200-104070800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr9:104069200-104070800	Enhancers	NHEK	skin
15	chr9:104069400-104069800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr9:104069400-104070800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr9:104069400-104075000	Weak transcription	Fetal Brain Male	brain

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