Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:103462912..103463800-chr9:104073433..104074690,5	K562	blood:
2	chr9:103363137..103364168-chr9:104073197..104074607,7	K562	blood:

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10217289	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10217411	0.89[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12337610	1.00[CEU][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12338304	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12352498	1.00[ASN][1000 genomes]
rs1341768	0.90[CEU][hapmap];1.00[ASN][1000 genomes]
rs13440036	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs13440141	1.00[CEU][hapmap];0.90[YRI][hapmap];0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs13440426	0.89[CEU][hapmap];1.00[ASN][1000 genomes]
rs1544193	0.97[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1544194	0.97[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2000165	0.97[EUR][1000 genomes]
rs28398252	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs28489693	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55805275	1.00[ASN][1000 genomes]
rs56198539	1.00[ASN][1000 genomes]
rs6479047	0.90[CEU][hapmap]
rs6479048	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7028337	0.89[CEU][hapmap];1.00[ASN][1000 genomes]
rs7855910	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037157	chr9:104045761-104149233	Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1049740	chr9:104049624-104075825	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:104069400-104075000	Weak transcription	Fetal Brain Male	brain
2	chr9:104069600-104074800	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr9:104069800-104074200	Weak transcription	Adipose Nuclei	Adipose
4	chr9:104069800-104075000	Weak transcription	Brain Germinal Matrix	brain
5	chr9:104069800-104075000	Weak transcription	Fetal Muscle Leg	muscle
6	chr9:104070800-104075000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr9:104072000-104073600	Weak transcription	Brain Substantia Nigra	brain
8	chr9:104072200-104074200	Weak transcription	HepG2	liver
9	chr9:104072400-104075800	Enhancers	Brain Hippocampus Middle	brain
10	chr9:104072800-104073600	Weak transcription	Brain Angular Gyrus	brain
11	chr9:104072800-104074200	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr9:104073000-104073800	Enhancers	Brain Anterior Caudate	brain
13	chr9:104073000-104088600	Weak transcription	Brain Cingulate Gyrus	brain

Quick Search: