Variant report

Variant	rs7028337
Chromosome Location	chr9:104072682-104072683
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:103463011..103463627-chr9:104072026..104072868,2	MCF-7	breast:
2	chr9:104070042..104072978-chr9:104153552..104156016,2	MCF-7	breast:
3	chr9:104068294..104070576-chr9:104071673..104073236,2	MCF-7	breast:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10120191	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10217289	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10217411	0.88[CEU][hapmap];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10217724	0.89[CEU][hapmap];1.00[ASN][1000 genomes]
rs12337610	0.89[CEU][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12338304	1.00[ASN][1000 genomes]
rs12352498	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1341768	1.00[CEU][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13440036	0.88[CEU][hapmap];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13440141	0.89[CEU][hapmap];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13440426	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1544193	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1544194	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28398252	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28489693	0.92[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs55805275	1.00[ASN][1000 genomes]
rs56198539	1.00[ASN][1000 genomes]
rs6479047	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6479048	0.88[CEU][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7855910	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037157	chr9:104045761-104149233	Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1049740	chr9:104049624-104075825	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:104069400-104075000	Weak transcription	Fetal Brain Male	brain
2	chr9:104069600-104074800	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr9:104069800-104073000	Weak transcription	Brain Anterior Caudate	brain
4	chr9:104069800-104074200	Weak transcription	Adipose Nuclei	Adipose
5	chr9:104069800-104075000	Weak transcription	Brain Germinal Matrix	brain
6	chr9:104069800-104075000	Weak transcription	Fetal Muscle Leg	muscle
7	chr9:104070800-104075000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr9:104071600-104072800	Enhancers	Brain Inferior Temporal Lobe	brain
9	chr9:104071800-104073000	Enhancers	Brain Cingulate Gyrus	brain
10	chr9:104072000-104073600	Weak transcription	Brain Substantia Nigra	brain
11	chr9:104072200-104072800	Enhancers	Brain Angular Gyrus	brain
12	chr9:104072200-104074200	Weak transcription	HepG2	liver
13	chr9:104072400-104075800	Enhancers	Brain Hippocampus Middle	brain

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