Variant report

Variant	rs28489693
Chromosome Location	chr9:104063302-104063303
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10217289	1.00[ASN][1000 genomes]
rs10217411	1.00[ASN][1000 genomes]
rs10217724	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12337610	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12338304	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12352498	0.98[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1341768	0.99[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs13440036	1.00[ASN][1000 genomes]
rs13440141	1.00[ASN][1000 genomes]
rs13440426	0.97[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1544193	1.00[ASN][1000 genomes]
rs1544194	1.00[ASN][1000 genomes]
rs2000165	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs28398252	1.00[ASN][1000 genomes]
rs55805275	1.00[ASN][1000 genomes]
rs56198539	1.00[ASN][1000 genomes]
rs6479048	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7028337	0.92[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7855910	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037157	chr9:104045761-104149233	Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1049740	chr9:104049624-104075825	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:104048800-104071600	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr9:104051400-104067800	Weak transcription	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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