Variant report

Variant	rs55805275
Chromosome Location	chr9:104063940-104063941
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:104018589..104020480-chr9:104063589..104065915,2	K562	blood:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10114402	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10120191	0.81[EUR][1000 genomes]
rs10217289	1.00[ASN][1000 genomes]
rs10217411	1.00[ASN][1000 genomes]
rs10217724	1.00[ASN][1000 genomes]
rs11787626	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11793732	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12337610	1.00[ASN][1000 genomes]
rs12338304	1.00[ASN][1000 genomes]
rs12342385	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12352498	1.00[ASN][1000 genomes]
rs1329078	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1341768	1.00[ASN][1000 genomes]
rs13440036	1.00[ASN][1000 genomes]
rs13440141	1.00[ASN][1000 genomes]
rs13440426	1.00[ASN][1000 genomes]
rs1544193	1.00[ASN][1000 genomes]
rs1544194	1.00[ASN][1000 genomes]
rs17184228	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17764774	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17765053	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17765735	0.82[EUR][1000 genomes]
rs17765829	0.82[EUR][1000 genomes]
rs1935241	0.89[EUR][1000 genomes]
rs28398252	1.00[ASN][1000 genomes]
rs28447257	0.81[EUR][1000 genomes]
rs28489693	1.00[ASN][1000 genomes]
rs2900307	0.89[EUR][1000 genomes]
rs41274979	0.97[EUR][1000 genomes]
rs56043065	0.82[EUR][1000 genomes]
rs56198539	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56363836	0.82[EUR][1000 genomes]
rs6479048	1.00[ASN][1000 genomes]
rs7018478	0.98[EUR][1000 genomes]
rs7021563	0.97[EUR][1000 genomes]
rs7023079	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7028337	1.00[ASN][1000 genomes]
rs73509627	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73509628	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7855910	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037157	chr9:104045761-104149233	Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1049740	chr9:104049624-104075825	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:104048800-104071600	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr9:104051400-104067800	Weak transcription	HepG2	liver
3	chr9:104063400-104064000	Weak transcription	Brain Anterior Caudate	brain

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