Variant report

Variant	rs73509628
Chromosome Location	chr9:104095550-104095551
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:104094014..104095588-chr9:104098263..104099778,2	K562	blood:
2	chr9:104091442..104093122-chr9:104095434..104097211,2	K562	blood:

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10521055	1.00[ASN][1000 genomes]
rs11787626	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11788485	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11790161	0.83[EUR][1000 genomes]
rs11791228	0.85[EUR][1000 genomes]
rs11792021	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11792023	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11792975	0.85[EUR][1000 genomes]
rs11793732	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11793965	1.00[ASN][1000 genomes]
rs12342385	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16920200	1.00[ASN][1000 genomes]
rs17184228	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17764774	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17765053	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17765735	0.89[EUR][1000 genomes]
rs17765829	0.89[EUR][1000 genomes]
rs1935241	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1935242	1.00[ASN][1000 genomes]
rs28447257	0.88[EUR][1000 genomes]
rs2900307	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41274979	0.92[EUR][1000 genomes]
rs41281029	0.82[EUR][1000 genomes]
rs4403470	1.00[ASN][1000 genomes]
rs4416881	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4451365	0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4474082	0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4612403	0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs55658944	1.00[ASN][1000 genomes]
rs55805275	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56043065	0.89[EUR][1000 genomes]
rs56129942	0.85[EUR][1000 genomes]
rs56135593	0.88[AFR][1000 genomes]
rs56198539	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56213740	0.85[EUR][1000 genomes]
rs56316181	0.86[EUR][1000 genomes]
rs56363836	0.89[EUR][1000 genomes]
rs58013833	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs58772170	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7018478	0.91[EUR][1000 genomes]
rs7021563	0.89[EUR][1000 genomes]
rs7023079	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73492631	1.00[ASN][1000 genomes]
rs73492632	1.00[ASN][1000 genomes]
rs73492646	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73509627	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73509629	0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7855910	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037157	chr9:104045761-104149233	Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:104093800-104097000	Enhancers	Liver	Liver
2	chr9:104095200-104097400	Weak transcription	HepG2	liver

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