Variant report

Variant	rs2900307
Chromosome Location	chr9:104096510-104096511
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:104091442..104093122-chr9:104095434..104097211,2	K562	blood:

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10521055	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11787626	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11788485	1.00[ASN][1000 genomes]
rs11790161	0.88[CEU][hapmap];0.83[EUR][1000 genomes]
rs11791228	0.88[CEU][hapmap];0.84[EUR][1000 genomes]
rs11792021	1.00[ASN][1000 genomes]
rs11792023	1.00[ASN][1000 genomes]
rs11792290	1.00[CEU][hapmap]
rs11792722	0.89[CEU][hapmap]
rs11792975	0.84[EUR][1000 genomes]
rs11793732	0.91[EUR][1000 genomes]
rs11793965	1.00[ASN][1000 genomes]
rs11794505	0.92[AFR][1000 genomes]
rs12342385	0.91[EUR][1000 genomes]
rs16920200	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17184228	0.91[EUR][1000 genomes]
rs17764774	0.89[EUR][1000 genomes]
rs17765053	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs17765735	0.88[CEU][hapmap];0.89[EUR][1000 genomes]
rs17765829	0.89[EUR][1000 genomes]
rs1935241	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1935242	0.97[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2000166	0.89[CEU][hapmap]
rs28447257	0.88[EUR][1000 genomes]
rs41274979	0.89[EUR][1000 genomes]
rs41281029	0.84[EUR][1000 genomes]
rs4403470	1.00[ASN][1000 genomes]
rs4416881	1.00[ASN][1000 genomes]
rs4451365	1.00[ASN][1000 genomes]
rs4474082	1.00[ASN][1000 genomes]
rs4612403	1.00[ASN][1000 genomes]
rs55658944	0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs55786195	0.86[AFR][1000 genomes]
rs55805275	0.89[EUR][1000 genomes]
rs55947778	0.86[AFR][1000 genomes]
rs55952033	0.83[AFR][1000 genomes]
rs56043065	0.89[EUR][1000 genomes]
rs56129942	0.84[EUR][1000 genomes]
rs56198539	0.89[EUR][1000 genomes]
rs56213740	0.84[EUR][1000 genomes]
rs56316181	0.86[EUR][1000 genomes]
rs56363836	0.89[EUR][1000 genomes]
rs58013833	1.00[ASN][1000 genomes]
rs58772170	1.00[ASN][1000 genomes]
rs7018478	0.88[EUR][1000 genomes]
rs7021563	0.89[CEU][hapmap];0.86[EUR][1000 genomes]
rs7023079	0.91[EUR][1000 genomes]
rs73492631	0.97[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73492632	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73492646	1.00[ASN][1000 genomes]
rs73509627	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73509628	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73509629	1.00[ASN][1000 genomes]
rs7855910	0.88[CEU][hapmap];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037157	chr9:104045761-104149233	Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:104093800-104097000	Enhancers	Liver	Liver
2	chr9:104095200-104097400	Weak transcription	HepG2	liver
3	chr9:104095600-104101800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr9:104096400-104096600	Bivalent Enhancer	Left Ventricle	heart
5	chr9:104096400-104096800	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived

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