Variant report

Variant	rs17765735
Chromosome Location	chr9:104104350-104104351
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RAD21	chr9:104104270-104104548	H1-hESC	embryonic stem cell:	n/a	n/a
2	RAD21	chr9:104104339-104104532	H1-hESC	embryonic stem cell:	n/a	n/a
3	RAD21	chr9:104104244-104104576	H1-hESC	embryonic stem cell:	n/a	n/a
4	RAD21	chr9:104104311-104104529	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr9:104098689..104102029-chr9:104103709..104106511,4	K562	blood:
2	chr9:104103557..104105942-chr9:104115837..104118700,2	K562	blood:
3	chr9:104103989..104106039-chr9:104109171..104111640,2	K562	blood:

Variant related genes	Relation type
BAATP1	TF binding region
ENSG00000227411	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11787626	0.83[EUR][1000 genomes]
rs11790161	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11791228	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11792290	0.88[CEU][hapmap]
rs11792975	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11793732	0.83[EUR][1000 genomes]
rs12342385	0.83[EUR][1000 genomes]
rs17184228	0.83[EUR][1000 genomes]
rs17764774	0.82[EUR][1000 genomes]
rs17765053	0.88[CEU][hapmap];0.83[EUR][1000 genomes]
rs17765829	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1935241	0.89[EUR][1000 genomes]
rs2000166	0.88[CEU][hapmap]
rs28447257	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2900307	0.89[EUR][1000 genomes]
rs41274979	0.82[EUR][1000 genomes]
rs41281029	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55805275	0.82[EUR][1000 genomes]
rs56043065	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56129942	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56198539	0.82[EUR][1000 genomes]
rs56213740	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56316181	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56363836	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7018478	0.81[EUR][1000 genomes]
rs7021563	0.88[CEU][hapmap]
rs7023079	0.83[EUR][1000 genomes]
rs73509627	0.89[EUR][1000 genomes]
rs73509628	0.89[EUR][1000 genomes]
rs7855910	0.86[CEU][hapmap];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037157	chr9:104045761-104149233	Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv3439010	chr9:104103556-104106104	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
3	esv3354719	chr9:104104331-104105579	Flanking Active TSS Enhancers Active TSS Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:104104000-104106000	Enhancers	Liver	Liver
2	chr9:104104200-104104600	Enhancers	HepG2	liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links