Variant report
| Variant | rs11793732 |
|---|---|
| Chromosome Location | chr9:104092850-104092851 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr9:104091442..104093122-chr9:104095434..104097211,2 | K562 | blood: |
(count:1 , 50 per page) page:
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| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-RP11-35N6.1.1-1 | chr9:104092849-104093015 | NONHSAT133726 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:29)
| rs_ID | r2[population] |
|---|---|
| rs10114402 | 0.84[AMR][1000 genomes] |
| rs11787626 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11790161 | 0.88[CEU][hapmap] |
| rs11791228 | 0.88[CEU][hapmap] |
| rs11792290 | 1.00[CEU][hapmap] |
| rs11792722 | 0.89[CEU][hapmap] |
| rs12342385 | 1.00[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs1329078 | 0.84[AMR][1000 genomes] |
| rs17184228 | 1.00[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs17764774 | 1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs17765053 | 1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs17765735 | 0.88[CEU][hapmap];0.83[EUR][1000 genomes] |
| rs17765829 | 0.83[EUR][1000 genomes] |
| rs1935241 | 0.91[EUR][1000 genomes] |
| rs2000166 | 0.89[CEU][hapmap] |
| rs28447257 | 0.82[EUR][1000 genomes] |
| rs2900307 | 0.91[EUR][1000 genomes] |
| rs41274979 | 0.86[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs55805275 | 0.85[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs56043065 | 0.83[EUR][1000 genomes] |
| rs56198539 | 0.85[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs56316181 | 0.80[EUR][1000 genomes] |
| rs56363836 | 0.83[EUR][1000 genomes] |
| rs7018478 | 0.81[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs7021563 | 0.89[CEU][hapmap];0.89[EUR][1000 genomes] |
| rs7023079 | 1.00[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs73509627 | 0.86[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs73509628 | 0.86[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs7855910 | 0.88[CEU][hapmap];0.91[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1037157 | chr9:104045761-104149233 | Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr9:104091800-104094600 | Weak transcription | HepG2 | liver |
| 2 | chr9:104092000-104093800 | Weak transcription | Liver | Liver |
