Variant report

Variant	rs17765053
Chromosome Location	chr9:104083253-104083254
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:104081884..104083755-chr9:104086897..104088797,2	K562	blood:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10114402	0.84[AMR][1000 genomes]
rs10819918	1.00[AFR][1000 genomes]
rs11787626	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11789410	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11789474	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11790161	0.88[CEU][hapmap]
rs11791228	0.88[CEU][hapmap]
rs11791451	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11792290	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11792722	0.89[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11793732	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12342385	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1329078	0.84[AMR][1000 genomes]
rs17184228	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17764774	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17765735	0.88[CEU][hapmap];0.83[EUR][1000 genomes]
rs17765829	0.83[EUR][1000 genomes]
rs1935241	0.91[EUR][1000 genomes]
rs2000166	0.89[CEU][hapmap]
rs28447257	0.82[EUR][1000 genomes]
rs2900307	0.91[EUR][1000 genomes]
rs41274979	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55805275	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56021420	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs56043065	0.83[EUR][1000 genomes]
rs56198539	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56316181	0.80[EUR][1000 genomes]
rs56363836	0.83[EUR][1000 genomes]
rs7018478	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7021563	0.89[CEU][hapmap];0.95[EUR][1000 genomes]
rs7023079	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73509627	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73509628	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7855910	0.88[CEU][hapmap];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037157	chr9:104045761-104149233	Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:104073000-104088600	Weak transcription	Brain Cingulate Gyrus	brain
2	chr9:104075600-104088600	Weak transcription	Brain Germinal Matrix	brain
3	chr9:104079000-104085600	Weak transcription	A549	lung
4	chr9:104080000-104089000	Weak transcription	Brain Hippocampus Middle	brain
5	chr9:104080400-104088600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr9:104080600-104089800	Weak transcription	Fetal Brain Female	brain
7	chr9:104080800-104084800	Weak transcription	Liver	Liver
8	chr9:104083000-104089000	Weak transcription	Brain Anterior Caudate	brain
9	chr9:104083200-104086200	Enhancers	HepG2	liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links